- Probe CUST_41525_PI390587928
- Source Contig U35_1886
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41525_PI390587928 | Hv_44K_v2 | ACGAGCAGGATGTGTCCGGCATGGGCGACTTCTTCGGGGAGATGGCCGAGATGATGAGCC | 416 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.229 | 0.200 | 0.858 | 1.692 | 1.864 | 1.542 |
| Raw | 3.220 | 4.208 | 25.634 | 79.640 | 31.659 | 28.459 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK356660 | 1179 | 2e-24 | 524 - 583 | 100 | 60 / 60 | plus | ABC43882 |
| MLOC | AK251072.1 | 1332 | 2e-24 | 615 - 674 | 100 | 60 / 60 | plus | ABC43882 |
| MLOC | MLOC_12900.5 | 1039 | 7e-23 | 317 - 376 | 98 | 59 / 60 | minus | ABC43882 |
| MLOC | MLOC_12900.6 | 1230 | 7e-23 | 400 - 459 | 98 | 59 / 60 | minus | ABC43882 |
| MLOC | MLOC_12900.4 | 1205 | 7e-23 | 666 - 725 | 98 | 59 / 60 | minus | ABC43882 |
| MLOC | MLOC_12900.2 | 1366 | 7e-23 | 584 - 643 | 98 | 59 / 60 | minus | ABC43882 |
| MLOC | MLOC_12900.3 | 1177 | 7e-23 | 584 - 643 | 98 | 59 / 60 | minus | ABC43882 |
| JLOC1 | JLOC1_8682.2 | 1690 | 4e-23 | 545 - 604 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC05598 | 541 | 1e-23 | 399 - 458 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_1886 | 596 | 3e-25 | 417 - 476 | 100 | 60 / 60 | plus |
Contig Sequence (596 bp)
>U35_1886 596 Hv_44K_v2 GTGAACGTTCGTTCCTGCGCCACCTTACCAGCATACGGCATTCGCCTTCCCGCGCCTCCG GCCAGCTGCCGACAACGTACCGGCGACGAGCTCGACAGCGACCGTACGTAAAGGAGGCGG TGGTACCGGCGCCATGGCCGACCACCGGCAACGGCGACTGGGCGGCGCCGACGTCGACCT CTACGCCGTCCTGGGGCTCAAGAAGGAGTGCTCCGACGCCGACCTCAGGCTCGCCTACCG GAGGCTCGCCATGACATGGCATCCGGACCGGTGCTCGGCGTCCGGCAGCTCGGCGCGCGT GGAGGAGGCCAAGGAGCGGTTCCAGGAGATCCAGAGCGCATACTCCGTGCTCTCCGACGC CGGCAAGCGGCTCCTCTACGACGTCGGCGTCTACGACAGCGACGATGACCGCCGCGACGA GCAGGATGTGTCCGGCATGGGCGACTTCTTCGGGGAGATGGCCGAGATGATGAGCCAGGC CACGCCGACCGAGAGCTTCGAGGAGCTGCAGCAGCTGTTCGTGGACATGTTCCAGGCCGA CCTCGTCGCCGGCGGGTTCGGCGGTGCGCCTCCTATGGGCCACCGGGTCCAGGCCC
Homology of Contig U35_1886 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g09560.1 | 236 | 2e-52 | protein|heat shock protein DnaJ, putative, expressed |
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |