barSeed - Barley Seed Development Database

Probe CUST_41523_PI390587928

Source Contig U35_1887

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41523_PI390587928	Hv_44K_v2	CTTGATTCTCTCATGGTACCACTCATGGTAAATTTTTGTGTTTTGACCTTTTGCACAAAA	1189	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251072.1	1332	6e-24	1229 - 1287	100	59 / 59	plus	ABC43882
JLOC1	JLOC1_8682.2	1690	3e-24	1158 - 1216	100	59 / 59	plus
JLOC1	JLOC1_8682.1	1548	3e-24	1016 - 1074	100	59 / 59	plus
Harvest35	U35_1887	1262	3e-25	1190 - 1249	100	60 / 60	plus

Contig Sequence (1262 bp)

>U35_1887 1262 Hv_44K_v2
CACGCGTCCGGGAGCCCAGACAGCCGAGGAGAGAGAAAGAGGGAAACTTCAGGAGCCTCC
TCCTCCTCCCCCGGCGCACCCTCCGGCCGGCGACGCGCGCGGCATGGCCACCGGCGGCGA
CGGGGACCCGGCGGCGCCCGGCGGCGGCGACCTGTACGCCGTGCTGGGGCTCAGCAAGGA
GTGCTCCGACGCCGACCTCAAGGTCGCCTACCGGAAGCTCGCCATGAGGTGGCATCCGGA
CAGGTGCTCGTCCTCCAGCGGCACCAAGCACATGGAGGAGGCCAAGGAGAAGTTCCAGGA
GATCCAGGGCGCCTATTCGGGTCTCAATCTCCCTTCTCTCAAGCTCCACCCCCTCCCCCA
TATTTATCTGCCCACAGTCCAACACCACATCACTTGTTTACATGTTGCAACAAACTGACT
AACCCGCCGAACCGATCTACCAAGCTAGTTGGCAAACTTATCGCATGGAGCCCTCGTGCT
CCGATCGCATTGTTGTTCTTGTGCAGTCCTCTCCGACGCCAACAAGCGGTTCCTCTACGA
CGTGGGGGTGTACCAAGAAGAAGAAGACAGCGACGACAGCATGCAGGGGATGGGGGACTT
CCTTGGTGAGATGGCCCATATGATGAGCCAGACGCGGCCAGCGAGGCAGGAGAGCTTCGA
GGAGCTGCAGCAGCTGTTCGTGGACATGTTCCAGGCCGACCTCGTCGCCGGCGGGTTCGG
CGGTGCGCCTCCTATGGGCCACCGGGTCCAGGCCCCGAGTCCGTCCTGTACCCCTCGACC
TACGTTTGCGCAAGCACGGCCGTCGTGTAACAAGGGTGCCAACAAGCGGTGTTCGTCGGC
GATGGGCTGCGGCATGCCGCCAAGGGCCTGTCGTCCGGGGTCAGGTTCCAAGGGAGGTGA
TTGGAGGCGACGGGAGGAGGCGCCATGGACGACGACGCAGGAAGACACGAGCATAGGCGG
CAGGAAGAAGAAACAGAGGCCGTCGACGGGCCACGGCGAGTCGTGCTAGGAGGGAAGATG
GGGATATCGGCGCGCCCGCGGCAGCGTAGATGCGCGGCGCGCCGTGACCAAACCTTCTGT
CGGGGGGATGCAGTACCTAGTACTCCCTACTCTGTGCGGATCTGACTCACGGTCGGCAAG
TTCTGGAGGATGATGCGCAAACTTTTTAATTTGTTTCTTCGTTTGTTCTCTTGATTCTCT
CATGGTACCACTCATGGTAAATTTTTGTGTTTTGACCTTTTGCACAAAAAAAAAAAAAAA
AA

Homology of Contig U35_1887 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None