barSeed - Barley Seed Development Database

Probe CUST_41517_PI390587928

Source Contig U35_1890

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41517_PI390587928	Hv_44K_v2	GACATGTCGTACGGAAAGCTGTACAATTGATTATAGTCAAACATCGATCAAATTACTTAG	1286	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.982	2.984	1.075	0.847	0.538	0.577
Raw	38.565	63.425	19.190	22.921	2.943	6.075

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248709.1	1451	2e-24	1300 - 1359	100	60 / 60	plus	ABC04701 ABC35828 ABC49736
MLOC	AK252706.1	1435	2e-24	1348 - 1407	100	60 / 60	plus	ABC04701 ABC35828 ABC49736
MLOC	AK365113	1432	2e-24	1263 - 1322	100	60 / 60	plus	ABC04701 ABC35828 ABC49736
MLOC	MLOC_69919.1	863	2e-24	24 - 83	100	60 / 60	minus	ABC04701 ABC35828 ABC49736
JLOC1	JLOC1_46360.1	939	8e-25	780 - 839	100	60 / 60	plus
Harvest21	ABC35828	253	1e-24	179 - 237	100	59 / 59	plus	ABC35828
Harvest21	ABC04701	1342	5e-23	1287 - 1342	100	56 / 56	plus	ABC04701
Harvest35	U35_1890	1369	3e-25	1287 - 1346	100	60 / 60	plus

Contig Sequence (1369 bp)

>U35_1890 1369 Hv_44K_v2
CGCTGGTAAGCTCGGCCGATCACCCCCTCTTCTTCCGTTCATCATTTCGTTCTTCTTCTG
TTCCACCAATCTGGTATGGTGATCGCCTGATCGGATCGCCAGTTCACCGCCAACCCCATC
TATTCTGATCTCGATCGGTGCTCTGTTACAACGATAATCCAGAAAAGGGAGATGGAGGTC
ATCCGCGGGCCGATTCTACCGCGCTGCGCTGCGCCCGCTCTGACCTCCGGCTCTCGGATC
GGCGGCCAGCTGCTGAGGCGCGTGCGCATGCGGAGGAGGGCTTCCGGTGCCGTCTCGCCA
GGCGACTACCACGCCGTGTCGCCCAGGTTCTTCGGTGCCCCGACCCAGCATCACAGCACG
GGCTCCTGGCCTGTTCGCTGCAGCTACGGCTCGTCATCTGACGGGGACGGCGCCCCGCCG
GCGAACTTCGACGCCAGCGGCGAGGAGTTCGTCGACTCCAGCGTCATGGAGGCTGTGGAG
CTCAGATGTGTGTCAGATGGTTTCGTGATCAGAATGCGCGACGGAAGAAACCTTAGGTGT
GTCCAGAATAACCCCCGCGTGCTAAGGCTGCGGGATTCTACGCCTCACCATGCTATCGTG
CTCAAGATGGAAGATGGGAGCGATCTTCTGCTCCCCATTATTGTCATGGAGACACCAAGT
ATTATGCTACTGGCCGCCCTTCGGAACATTCGGATTCCAAGGCCAACAATTTATAATGTG
GTAAAGGAGATGACCGAAATGATGGGATACACGGTACGTTTGGTGCGGATTACAGAAATG
GTGCATGATGCTTACTACTCTAGATTGTATCTTGCAAAGACTGGAAATGAAGAAGAGGTT
ATTAGTTTTGATCTCAAGCCATCAGATGCCATCAACATTGCTTTCCGGTGCAAGGTTCCT
ATACAAGTCAATAAGCGCATTGCATACAACAACGGTCTGAAAGTGATACAGCCAAAGCCA
ACTGGGAGCTACGTGAACTCTGACCAAATCCAATACGCGAGACTGGACAAGCCCGGCGAC
CAGCCTTGCTTTGAAGCCCAGGAGTTTGATTTGGTGCGCGGCATGCTTGTTGCTGCTGTT
GAGGAACGTTATAAAGATGCTGCTCAATACAGAGATCGCCTTCTCATGTTCCGGGCAAAC
AAAAAGAACACGATATAACAGAGCCAGATGGGGGTGTACATAGTGACCTTTGCCAAGGAA
ATAGAAGCTTCGGCAAACATCAAGATGCACGATGTGAATATGTACATAGCTAATGACTGT
AACTTTTAATATTTTTCCTCTTTGAAGACATGTCGTACGGAAAGCTGTACAATTGATTAT
AGTCAAACATCGATCAAATTACTTAGATGTTTTAGGAAAAAAAAAAAAA

Homology of Contig U35_1890 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g50622.4	332	2e-180	protein\|DNA-binding protein DSP1, putative, expressed
Brachypodium v1_2	Bradi1g15430.3	321	0.0
Arabidopsis v10	AT1G19660.1	329	1e-95	Wound-responsive family protein \| chr1:6800361-6802240 REVERSE LENGTH=329