barSeed - Barley Seed Development Database

Probe CUST_41515_PI390587928

Source Contig U35_1891

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41515_PI390587928	Hv_44K_v2	TGATGGAATAATGTTGGGAATGTGCACCAAAAGTACTCTTGCTGCATCATGCTGGTAGCC	887	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.359	1.733	1.128	0.801	0.328	0.339
Raw	1722.127	3425.194	1953.020	2164.891	316.848	353.236

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_17935.1	1759	8e-25	1529 - 1588	100	60 / 60	plus
Harvest21	ABC06891	1988	3e-25	1818 - 1877	100	60 / 60	plus
Harvest35	U35_1891	1129	3e-25	888 - 947	100	60 / 60	plus

Contig Sequence (1129 bp)

>U35_1891 1129 Hv_44K_v2
CTGGATACTATTTGGTGCTAGAAGAAGGCGGCACCCGCACTAGAAGTGGAGGCCTTTGCA
TAGCTTTGTGTGGCCCTGACCCAGGGTTATTGGTGGGACCGTTAGTGGAGTCCTGACAGC
AGCTGGAACTGTTCAGGTGATAGTGGGTAGCTTTATGTATGGCGGCGGGACAAAGAAGAA
CAAAGGCAAAGCAGATCAAGATGTGGAGAACGAAGAGCAGAACGGCGGCGAAGACACCCC
CACGCTGGCGCTGCCGGAGCACCCGCACAACATGCCGCCCCACCCGATGAGCGGATGGCC
ACCCGGCCTGATGAACCAGATGGACCCGAGATCGTCTCCCATGTACGGCGGCGGGTCAAA
CAAAAACAAGACCAAAGCGGAGCAAGACATGGAGGACGAGGAGCGCAACAGCGGCGGTGG
TGAAGAGCCCCTCGCGATGGCGCATCCCGAGCACAACATGAACATGCCGCCGCCCCAGAT
GAGCGGGTGGCAGCCTGGCCTGATGCGGCAGATGGACCCGCGGTCCTCCAGCATCGACAT
CAACTCGATTCGCGAGTAGGTCTGTCGTCTCTCTCCGGAGAGACACCGCTCCTCAGACCC
CGGATCAGATGAGATGAGATGAGATCGTCACTTTTAGCAACCACGCAGCAAGCATCATGT
ACCAGGCCTGTTGTAGATTGCGGTGTTGTTGGAGATTGCTGCTGCTACTGCTGTGCCTGT
CGTCTTCGTCTTAGGAACGAAACGGAACCCTACCCTGCATATCGATTGATCATATTATTG
GTCAAATTGTACTGCGATGTTGTATTAGAGAAGAGATGAAGATGGATCCTTATTACCTAC
CTAGTAGTATACAGGAAGAGAATGGAGGAAAACCTGGGTATTCTAGTTGATGGAATAATG
TTGGGAATGTGCACCAAAAGTACTCTTGCTGCATCATGCTGGTAGCCATGCCGCTTGCCG
TCGTCTTCATCCGGTTTGAACCCGGTTGCCCATAACTGTTTTTTTTTTCTACTGGCTATT
CATCTATTTACTGTGTTACGTTCATCTATTTTCTTTTCTTTGCATGAACATTGTCTTGTC
ATACCTAATTTAATTTATGTGCTATGTTTATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1891 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g55950.1	451	4e-63
Arabidopsis v10	None