barSeed - Barley Seed Development Database

Probe CUST_41514_PI390587928

Source Contig U35_714

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41514_PI390587928	Hv_44K_v2	TGCCCTAGAAGAAGAAACCGGAGGCAACTCTCGAATAAATTGGTGTTGCTTTCTTCCATA	1275	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.102	0.219	1.140	1.780	1.016	1.258
Raw	11.490	40.208	177.482	448.550	84.629	113.875

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_35949.2	2265	6e-21	2072 - 2130	97	57 / 59	plus
JLOC1	JLOC1_35949.1	1750	6e-21	1557 - 1615	97	57 / 59	plus
Harvest35	U35_714	1373	3e-25	1276 - 1335	100	60 / 60	plus

Contig Sequence (1373 bp)

>U35_714 1373 Hv_44K_v2
TCGAGCACTGTTGGCCTAGCTGCTGCTGCTACGCTTGGCCGTGCTGCTTCTTGCGGGTGC
GGCGTCCAGCCACGCCCAGAAGTACAACGCGGTGTTCAACTTCGGCGACTCGATCACGGA
CACGGGCAACCTGTGCACGAGCGGGAAGCCGACGGCGATCACCTTCACGCAGCCCCCCTA
CGGCGAGACCTACTTCGGCTCCCCCACCTGCCGCTGCTCCGACGGCCGCGTCATCGTCGA
CTTCCTCAGTACCAAGTTTGGGGTGCCGTTCCTGGCGCCGTCCAAGTCGTCCAACGGCAC
GGACTTCAAGCAGGGCGCCAACATGGCCATCACGGGGGCGACGGCCATGGACGCGCCCTT
CTTCCGCGGCCTCGGCCTGTCCGACAAGATCTGGAACAACGGGCCCATCAGCCTCCAAAT
CCAGTGGTTCCAGCAGATCACCTCCACCGTGTGCGGCGACGCCGCCGCCTGCAAGCGGTA
CCTGCGGGACTCGCTGGTGGTGTTCGGCGAGTTCGGGGGCAACGACTACAACGCGATGCT
GTTCGGCAACTACAGCGCGGGGCAGGCGAGCAGGTACACGACCAAGATCGTCAACACCAT
CATCAGGGGCGTGGAGAAGGTGGTGGGCATGGGGGCGAGGGACGTGGTGGTGCCCGGGGT
GCTCCCCATCGGCTGCTTCCCCATCTACCTCACCGTCTACGGCACCAACAGCAGCGCCGA
CTACGACACCCTCGGCTGCCTCCGCAAGTTCAACGACCTCTCCACGTTCCACAACAACCT
GCTGCAGGCCAAGATCGCCCGCCTCCGCAAGCGCTACGGCCGGGCGGCGCGCGTCATGTA
CGCCGACTTCTACTCCGCCGTCTACGACATGGTCCAGAACCCAAGCAAATACGGATTCAA
CGCGGTTTTCGAGGCGTGCTGCGGGTCAGGGGGAGGCAAGTACAACTACGCAAACAGCGC
GAGGTGCGGGATGCAGGGCGCGGTGGCGTGCGCCAGCCCGGCCGACCACCTCAGCTGGGA
CGGCATCCACCTCACCGAGGCCGCGTACAAGCACATCACCGACGGCTGGCTCAACGGGCC
CTACTGCAGCCCGCCCATCCTCCACACCTAAACATTCTTTTATTCTATTTATTTATCTAT
TATGGAGCTGTGGTAGTACAGTAGTATTATTTATTGTTTGATTTGAGGTTCAGTTTACCT
AAAGGAAAAAAGGAAATTTGTTTCAGTGTCATATACTTATATGGTACGGTGGTGCTGAAA
TTATAATCTATACGTTGCCCTAGAAGAAGAAACCGGAGGCAACTCTCGAATAAATTGGTG
TTGCTTTCTTCCATAGCGGCCGCTCGAGCATCTTCTGGAGGGCCCAATTCGCC

Homology of Contig U35_714 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g06290.1	369	0.0	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi1g48870.1	363	0.0
Arabidopsis v10	AT5G45910.1	372	9e-92	GDSL-like Lipase/Acylhydrolase superfamily protein \| chr5:18620420-18622264 REVERSE LENGTH=372