barSeed - Barley Seed Development Database

Probe CUST_41512_PI390587928

Source Contig U35_715

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41512_PI390587928	Hv_44K_v2	CTGCTGTTGTTGTTGTGAACCTGTAACCTGATAGTAGTAATTGTTTTGTCCCATGGATGG	227	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.203	3.583	1.096	0.863	0.390	0.505
Raw	2020.787	2643.163	748.221	994.714	144.916	210.641

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252303.1	1682	2e-24	1582 - 1641	100	60 / 60	plus	ABC03023 ABC03024 ABC03025
MLOC	MLOC_65304.1	1894	2e-24	62 - 121	100	60 / 60	minus	ABC03023 ABC03024 ABC03025
JLOC1	JLOC1_42966.1	1998	8e-25	1748 - 1807	100	60 / 60	plus
Harvest21	ABC03028	812	3e-25	90 - 149	100	60 / 60	minus
Harvest21	ABC03027	594	3e-25	50 - 109	100	60 / 60	minus
Harvest21	ABC03023	1642	3e-25	1512 - 1571	100	60 / 60	plus	ABC03023
Harvest21	ABC03029	965	4e-24	51 - 108	100	58 / 58	minus
Harvest35	U35_717	1643	3e-25	1518 - 1577	100	60 / 60	plus
Harvest35	U35_716	683	3e-25	546 - 605	100	60 / 60	plus
Harvest35	U35_715	339	3e-25	228 - 287	100	60 / 60	plus
Harvest35	U35_720	899	4e-24	792 - 849	100	58 / 58	plus

Contig Sequence (339 bp)

>U35_715 339 Hv_44K_v2
GAGGGTTAACCCGACTGAACAAATAATAATAATTATAATAATAATATAATTATTATTATT
TGTTCAGTCGGGTTAACTATCATAACGTGTCTGGGGACCGGCCAAGGCTAAGGTTCCCGG
TCTGATCCGGTGGCAAAAGAATCGGGGCGCGTCTGTGGTGACGAGTGAAGAAGGAAGAAG
AAGAAGAAGATGACGGCAAGCGTCGTGGAATAGTAGTGCGGCCCGTGCTGCTGTTGTTGT
TGTGAACCTGTAACCTGATAGTAGTAATTGTTTTGTCCCATGGATGGAAAAAAAGAATGA
AAAGGAAAGAAATAATGCAAGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_715 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None