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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_41510_PI390587928Hv_44K_v2TGTAACCTGATAGTAGTAATTGTTTTGTCCCATGGATGGAGAAAAGAATGAAAAGGAAAG566GeneList: grey60
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 4.4063.6541.0930.8520.4010.564
Raw 722.723922.024255.763337.08750.46280.342



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK252303.116823e-211603 - 16639759 / 61plus ABC03023 ABC03024 ABC03025
Harvest21ABC030288123e-2569 - 12810060 / 60minus
Harvest21ABC0302316426e-221533 - 15939759 / 61plusABC03023
Harvest35U35_7166833e-25567 - 62610060 / 60plus
Harvest35U35_71716436e-221539 - 15999759 / 61plus
Harvest35U35_7153396e-22249 - 3099759 / 61plus



Contig Sequence (683 bp)

>U35_716 683 Hv_44K_v2
GCATGGTCCGGAGCCCCAGCAAATACGGTTTCAGCTCGGTGTTCGAGGCGTGCTGCGGGT
CGGGGGGAGGCAAGTACAACTACGCCAACAGCGCGAGGTGCGGCATGTCTGGCGCCTCCG
CATGCGCCAGCCCGGCGTCGCACCTCAGCTGGGACGGCATCCACCTCACCGAGGCCGCAT
ACAAGCAGATCACCGACGGATGGCTCAACGGCGCCTTCTGCCACCCCGCCATCACCCACT
AGCCACCCCACCTCACCTCACCTCAGTCCGTGCATGCATGCATGGGCGCATCAAAAACCT
CATCGTCGTCGTCGTCCATGAATCCATCATCAATCAATCAATCAACCGATCGATTATCAT
TATATTATTATTATTATTACAATTATTATTTGTTCAGTCGGGTTAACTATCATAACGTGT
CTGGGGACCGGCCAAGGCTACGGTTCCTGGTCTGATCCGGTGGCAAGAAAATCGGGGCGC
ACGAGTGAAGAAGGAAGGAAGAAGAAGATGACGGCAAGCGTCGTGGAATAGTAGTGCGGC
CCGTGCTGCTGTTGTTGTTGTGAACCTGTAACCTGATAGTAGTAATTGTTTTGTCCCATG
GATGGAGAAAAGAATGAAAAGGAAAGAAATAAAAAAAACAAGGAACTTTCTGCCGTGGCG
GCTAGGGAAAAAAAAAAAAAAAA



Homology of Contig U35_716 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None