- Probe CUST_41500_PI390587928
- Source Contig U35_720
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41500_PI390587928 | Hv_44K_v2 | CTGCTGTTGTTGTTGTGAACCTGTAACCTGATAGTAGTAATTGTTTTGTCCCATGGATCG | 791 | GeneList: grey60 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.242 | 3.609 | 1.101 | 0.849 | 0.420 | 0.503 |
| Raw | 1873.720 | 2474.093 | 694.725 | 905.636 | 142.751 | 190.616 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252303.1 | 1682 | 2e-23 | 1582 - 1639 | 100 | 58 / 58 | plus | ABC03023 ABC03024 ABC03025 |
| MLOC | MLOC_65304.1 | 1894 | 2e-23 | 64 - 121 | 100 | 58 / 58 | minus | ABC03023 ABC03024 ABC03025 |
| JLOC1 | JLOC1_42966.1 | 1998 | 1e-23 | 1748 - 1805 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC03029 | 965 | 3e-25 | 49 - 108 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC03028 | 812 | 4e-24 | 92 - 149 | 100 | 58 / 58 | minus | |
| Harvest21 | ABC03027 | 594 | 4e-24 | 52 - 109 | 100 | 58 / 58 | minus | |
| Harvest21 | ABC03023 | 1642 | 4e-24 | 1512 - 1569 | 100 | 58 / 58 | plus | ABC03023 |
| Harvest35 | U35_720 | 899 | 3e-25 | 792 - 851 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_717 | 1643 | 4e-24 | 1518 - 1575 | 100 | 58 / 58 | plus | |
| Harvest35 | U35_716 | 683 | 4e-24 | 546 - 603 | 100 | 58 / 58 | plus | |
| Harvest35 | U35_715 | 339 | 4e-24 | 228 - 285 | 100 | 58 / 58 | plus |
Contig Sequence (899 bp)
>U35_720 899 Hv_44K_v2 GGGGCGACGGACGTGGTGGTGCCGGGCGTGCTCCCCATCGGCTGCTTCCCCATCTACCTC ACCATCTACGGCACCTCCAGCGCCGCCGACTACGACTCCCTCGGCTGCCTCAAGAAGTTC AACGACCTCTCCACGTACCACAACAGCCTGCTCCAGGCCAAGGTGTCCACCCTCCAGGCC AAGTACAAGTCCGCCCGCATCATGTACGCCGACTTCTACGCCGGCGTCTACGACATGGTC CGGAGCCCCAGCAAATACGGTTTCAGCTCGGTGTTCGAGGCGTGCTGCGGGTCGGGGGGA GGCAAGTATAACTACGCCAACAGCGCGAGGTGCGGCATGTCCGGCGCCTCCGCATGCGCC AGCCCGGCGTCGCACCTCAGCTGGGACGGCATCCACCTCACCGAGGCCGCATACAAGCAG ATCACCGACGGATGGCTCAACGGCGCCTTCTGCCACCCCGCCATCACCCACTAGCCACCC CACCTCACCTCACCTCACCTCAGTCCGTGCATGCATGCATGGGCGCATCAAAAACCTCAT CGTCGTCGTCGTCCATGAATCCATCATCAATCAATCAATCAACCGATCGATTATCATTAT GTTATTATTATAATTATTATTATTTGTTCAGTCGGGTTAACTATCATAACGTGTCTGGGG ACCGGCCAAGGCTAAGGTTCCCGGTCTGATCCGGTGGCAAAAGAATCGGGGCGCGTCTGT GGTGACGAGTGAAGAAGGAAGAAGAAGAAGAAGATGACGGCAAGCGTCGTGGAATAGTAG TGCGGCCCGTGCTGCTGTTGTTGTTGTGAACCTGTAACCTGATAGTAGTAATTGTTTTGT CCCATGGATCGAAAAAAAGAATAAAAAGGAAAGAAATAATGCAAGGAACTTTCTGCCGT
Homology of Contig U35_720 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g06290.1 | 369 | 2e-93 | protein|GDSL-like lipase/acylhydrolase, putative, expressed |
| Brachypodium v1_2 | Bradi1g48870.1 | 363 | 2e-100 | |
| Arabidopsis v10 | None |