barSeed - Barley Seed Development Database

Probe CUST_41494_PI390587928

Source Contig U35_726

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41494_PI390587928	Hv_44K_v2	GGATGCTAACCTCTGTTCTTTTGCCAATTTGTGGTTTACAGGCTTTGAGATCTTGGCTTT	323	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.916	1.117	0.910	0.640	1.265	1.126
Raw	3.298	7.903	6.385	5.483	3.717	3.429

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355742	1863	2e-24	1045 - 1104	100	60 / 60	plus	ABC02453 ABC38848
MLOC	MLOC_68518.1	3395	3e-21	1131 - 1191	97	59 / 61	plus	ABC02453 ABC29064 ABC38848
JLOC1	JLOC1_45342.2	3176	2e-21	2444 - 2504	97	59 / 61	minus
JLOC1	JLOC1_45342.1	3170	2e-21	2438 - 2498	97	59 / 61	minus
JLOC1	JLOC1_45341.5	5520	2e-21	1095 - 1155	97	59 / 61	plus
Harvest35	U35_726	885	3e-25	324 - 383	100	60 / 60	plus
Harvest35	U35_35510	531	6e-22	326 - 386	97	59 / 61	plus

Contig Sequence (885 bp)

>U35_726 885 Hv_44K_v2
CCATGGCCGCCGCGTCCTCCGCCACCTCCGTCCACGACTTCACCGTCAAGGATGCAAGCG
GCAAGGACGTCGACCTGAGCGTCTACAAGGGGAAGGTTCTTCTCATCGTTAACGTCGCAT
CCCAGTGTGGCTTAACGAACTCCAACTACACCGAGCTGAGCCAGCTGTACCCCAAGTACA
AGGACCAAGGTTTTTCTTCATCCATTATTTTTTATACCCTTTACCGTGTTATTATATGTA
TGTATTGTCATATGGATTACTGGGTTTAATATGCTTATTGCTTGATACTAGTTACTAGAT
CTAAACAACAAATTCCGGTTATTGGATGCTAACCTCTGTTCTTTTGCCAATTTGTGGTTT
ACAGGCTTTGAGATCTTGGCTTTCCCATGCAATCAGTTTGGTGGGCAGGAGCCTGGCACC
AATGATGAGATCGTTCAGTTTGCCTGCACTCGCTTCAAGGCCGAGTACCCCATTTTTGAC
AAGGTTGATGTCAACGGCAACAATGTTTCTCCCCTATACAAGTTCCTGAAGTCTAGCAAA
GGCGGCTTTTTCGGCGACAGCATCAAATGGAACTTCTCTAAGTTCTTGGTTGACAAGGAG
GGTCACGTTGTGGACCGCTATGCCCCGACCACTTCCCCCATGAGCATTGAGAAGGATATC
AAGAAGCTGCTTTAGAGCTCTTAGACCTGCTGGCTGGAGCCTGTAGAGAAATCTGTCACT
CTGTACTCAAGAAACATGAATAATGTTGTGTCAAAATAAAAATCTGTATGTAGTATTTCA
GAGGTTGCATCTACTGTATTTTCTGCATCCTACTCTGTACTTGTTGTATATGTCGTGTTA
ATGAATTCAATTATCGTAGCTGTTTGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_726 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g46960.2	169	2e-64	protein\|glutathione peroxidase domain containing protein, expressed
Brachypodium v1_2	Bradi3g51010.3	241	3e-64
Arabidopsis v10	AT4G11600.1	232	6e-60	\| Symbols: ATGPX6, PHGPX, LSC803, GPX6 \| glutathione peroxidase 6 \| chr4:7010021-7011330 REVERSE LENGTH=232