barSeed - Barley Seed Development Database

Probe CUST_41492_PI390587928

Source Contig U35_728

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41492_PI390587928	Hv_44K_v2	GTTGTGAGATTCATGTTCCTGAGGAACAAGTTTGGAATGTGATGCATGCCTGTTGTTCGT	1039	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.852	1.164	1.277	1.392	0.779	0.787
Raw	3356.683	7066.400	6900.020	11467.623	2336.033	2550.953

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355585	1117	2e-24	1051 - 1110	100	60 / 60	plus	ABC02453 ABC02454 ABC27692
MLOC	MLOC_73559.1	602	2e-24	4 - 63	100	60 / 60	minus	ABC02454 ABC27692
JLOC1	JLOC1_48979.1	2302	8e-25	846 - 905	100	60 / 60	plus
Harvest21	ABC02454	1126	3e-25	1042 - 1101	100	60 / 60	plus	ABC02454
Harvest35	U35_728	1124	3e-25	1040 - 1099	100	60 / 60	plus

Contig Sequence (1124 bp)

>U35_728 1124 Hv_44K_v2
GAAAAGGAAATAAAAAAGCCGAAGCAGATATCGTTCTCCTCCCCGCGCACCCACGATTTC
CGCTATAAAGCCCGGTCTCCGATCCCCGATGCCTTCTCGCCCCGCCCCGTTCATCCACCG
CCTCCGCCTCCTGAGAAGCGCCGTCGTCTCTCCCTCCTCCGCGCCGCTGCCGTGCAGCCG
CCCGCGCCTCGCCGTCCCGTTCTCGCAGCCGCCGATCCGCGCCCCCGCCTTCGCCGCCGC
TGCCTCGCCGCTGCTCCGCCCGGTCGGCGCCCGATTCTCGCTGTCCAGCAACATGGCCGC
CGCCGCCTCCTCCGCCTCCTCCGTCCACGACTTCACCGTCAAGGATGCAAGTGGAAAAGA
TGTCGATCTGAGCACCTACAAGGGGAAGGTTCTCCTCATTGTCAATGTTGCATCCCAGTG
TGGATTGACCAATTCCAACTATACGGAACTCGCTCAGTTGTATGAGAAGTACAAGGACCA
GGGTTTTGAGATCCTTGCTTTCCCATGCAACCAGTTTGGTGGGCAGGAACCTGGCACTAA
TGAGGAAATTGTTCAGTTTGCTTGCACTCGCTTCAAGGCCGAGTATCCAATTTTTGACAA
GGTTGATGTCAATGGTGACAATGTTGCACCTGTCTACAAGTTTCTGAAGTCAAGCAAAGG
CAGTCTCTTCGGGGACAACATCAAATGGAACTTCTCCAAGTTCTTGGTTGACAAGGATGG
GAATGTTGTGGATCGCTACGCGCCGACCACCTCCCCCCTCAGCATCGAGAAGGACATCAA
GAAGTTGCTCGCGAGTTCTTAAATCTTTATGCTGGATCAACTCGACGCATCGGTACACCT
GAAGCTTCAATAATGTTGTAATAAGGGTCGTGCTCGGAACTGGCTATGTTATGCGTGCTC
AGCAGCCTCCGATACCTTGCGCATTCCAATCTCGTATTGCCCGTCTCGTAGTATATATGA
CATGTAATGGATTTGGTGGAATGCATTACTTCTGTTGCAAAAAAAAAAAAAAATCTCCTC
TATCTGTGTCTTTATTGTTGTTGTGAGATTCATGTTCCTGAGGAACAAGTTTGGAATGTG
ATGCATGCCTGTTGTTCGTGGCTCAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_728 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g44500.1	239	7e-104	protein\|glutathione peroxidase, putative, expressed
Brachypodium v1_2	Bradi3g51010.3	241	2e-106
Arabidopsis v10	AT4G11600.1	232	2e-97	\| Symbols: ATGPX6, PHGPX, LSC803, GPX6 \| glutathione peroxidase 6 \| chr4:7010021-7011330 REVERSE LENGTH=232