- Probe CUST_4148_PI390587928
- Source Contig U35_28731
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4148_PI390587928 | Hv_44K_v2 | GTTATCCTCAGTTTCTCATCAGAATGGGTCCATGGTAGCTGGTTTGGCTAACATAACACA | 537 | GeneList: orange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.705 | 0.938 | 1.372 | 1.719 | 0.931 | 0.694 |
| Raw | 66.083 | 137.456 | 174.658 | 347.307 | 64.968 | 53.139 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_54689.4 | 4263 | 7e-23 | 2372 - 2431 | 98 | 59 / 60 | plus | ABC33223 |
| MLOC | MLOC_54689.5 | 6169 | 7e-23 | 2370 - 2429 | 98 | 59 / 60 | plus | ABC33223 |
| MLOC | MLOC_54689.6 | 6444 | 7e-23 | 2358 - 2417 | 98 | 59 / 60 | plus | ABC33223 |
| MLOC | MLOC_54689.7 | 6029 | 7e-23 | 2347 - 2406 | 98 | 59 / 60 | plus | ABC33223 |
| MLOC | MLOC_54689.1 | 5844 | 7e-23 | 2374 - 2433 | 98 | 59 / 60 | plus | ABC33223 |
| MLOC | MLOC_54689.2 | 5857 | 7e-23 | 2374 - 2433 | 98 | 59 / 60 | plus | ABC33223 |
| MLOC | MLOC_54689.3 | 6122 | 7e-23 | 2373 - 2432 | 98 | 59 / 60 | plus | ABC33223 |
| JLOC1 | JLOC1_35213.1 | 1161 | 4e-23 | 615 - 674 | 98 | 59 / 60 | minus | |
| JLOC1 | JLOC1_35212.2 | 6120 | 4e-23 | 2189 - 2248 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_35212.1 | 6279 | 4e-23 | 2374 - 2433 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC27764 | 600 | 3e-25 | 538 - 597 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28731 | 600 | 3e-25 | 538 - 597 | 100 | 60 / 60 | plus |
Contig Sequence (600 bp)
>U35_28731 600 Hv_44K_v2 GAGGATTGTGTGGGAGACTCTTCCTGGGATCCTGCACTATTTGCTTGTGACTGGAACATC TTCAAATGCAGAGTCTTATGCAAGTTATTACAATCAGTATGATGTTGTCAAGATCATCCA AGTACTTGCCCGTTCAGATGCATATACAGCTATATGTAGGAGAATAACAGAGTACTGGCC GCACCTGCTAGATGTATTCCAGAACGAGAGATCAAAAATAGGTAAGAATACTGATGCAAG CTATGCTCTAAAATGCAATATGTCACAGAGTGCTAGTCCAAGGGAAGCAGTAGATGGAAG TGTCCGTTCAATCTTAAAAGATGGTGGGGAGAGTAAAGCAGCAGTATTTTCTCAAGTAGA TGTGCAGCACAAATTTGTGGCTAATCAATTTACAGTGTGCTCTGCCGATCAACTGGAGGA ACAGAAATGCATGGTGACTAGTGTAGATGATGATACTGAGAACAACAACCTACAAACTTC TTTAGCTCAGAATGACATACATATTACACCAATCAATGGAGCTTTTGGATCCTCGGGGTT ATCCTCAGTTTCTCATCAGAATGGGTCCATGGTAGCTGGTTTGGCTAACATAACACATGC
Homology of Contig U35_28731 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi4g42780.1 | 1885 | 1e-62 | |
| Arabidopsis v10 | None |