barSeed - Barley Seed Development Database

Probe CUST_41489_PI390587928

Source Contig U35_731

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41489_PI390587928	Hv_44K_v2	AAAGAATTCACACATCAAAAGAGCAATCATCGACAAGAATGCTCGTATTGGAGATAACGT	1286	GeneList: darkolivegreen MasterList: Starch_synthesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.021	0.054	0.654	1.891	1.274	2.808
Raw	50.735	204.071	2173.247	9958.470	2197.480	5563.680

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK253094.1	2107	7e-23	1592 - 1651	98	59 / 60	plus	ABC02267
MLOC	MLOC_75979.1	611	7e-23	544 - 603	98	59 / 60	plus	ABC02267
JLOC1	JLOC1_50681.1	774	4e-23	554 - 613	98	59 / 60	plus
Harvest21	ABC02267	1991	1e-23	1451 - 1510	98	59 / 60	plus	ABC02267
Harvest21	ABC02266	1792	1e-23	1287 - 1346	98	59 / 60	plus
Harvest35	U35_731	1467	3e-25	1287 - 1346	100	60 / 60	plus
Harvest35	U35_732	2022	1e-23	1483 - 1542	98	59 / 60	plus

Contig Sequence (1467 bp)

>U35_731 1467 Hv_44K_v2
GCACACATCACTCAATATCTATATCCTTCCATTTTATATCCCTCGGTGATGGATGTACCT
TTGGCATCTAAAGTTCCCTTGCCCTCCCCTTCCAAGCATGAACAATGCAACGTTTATAGT
CATAAGAGCTCATCGAAGCATGCAGATCTCAATCCCCATGCTATTGATAGTGTTCTCGGT
ATCATTCTTGGAGGTGGTGCAGGGACTAGATTGTATCCCCTGACGAAGAAGCGTGCAAAG
CCTGCAGTGCCATTGGGTGCCAACTACAGGCTTATTGATATTCCTGTCAGTAATTGTCTG
AACAGCAACATATCAAAGATCTATGTGCTTACACAGTTCAACTCAGCTTCTCTTAATCGT
CATCTCTCACGAGCCTATGGGAGCAACATTGGAGGTTACAAGAATGAAGGATTTGTTGAA
GTCCTTGCTGCACAGCAGAGCCCAGATAACCCTGACTGGTTCCAGGGTACTGCAGATGCT
GTAAGGCAGTACTTGTGGCTATTCGAGGAGCATAATGTTATGGAGTATCTAATTCTTGCT
GGAGATCACCTGTACCGAATGGACTATGAAAAGTTTATTCAGGCACACAGAGAAACGGAT
GCTGATATTACTGTTGCTGCCTTGCCCATGGATGAGGAACGTGCAACTGCATTTGGCCTT
ATGAAAATCGATGAAGAAGGGAGGATAATTGAATTCGCAGAGAAACCAAAAGGAGAACAG
TTGAAAGCTATGATGGTTGATACGACCATACTTGGCCTTGAAGATGCGAGGGCAAAGGAA
ATGCCTTATATTGCTAGCATGGGTATCTATGTTATTAGCAAACATGTGATGCTTCAGCTT
CTCCGTGAGCAATTTCCTGGAGCTAATGACTTCGGAAGTGAAGTTATTCCTGGTGCAACT
AGCACTGGCATGAGGGTACAAGCATACCTATACGACGGTTACTGGGAAGATATTGGTACA
ATTGAGGCATTCTATAATGCAAATTTGGGAATTACCAAAAAACCAATACCTGATTTCAGT
TTCTATGACCGTTCTGCTCCCATTTACACACAACCTCGACACTTGCCTCCTTCAAAGGTT
CTTGATGCTGATGTGACAGACAGTGTAATTGGTGAAGGATGTGTTATTAAAAACTGCAAG
ATACACCATTCAGTAGTTGGACTCCGTTCCTGCATATCTGAAGGTGCAATAATAGAGGAC
ACGTTGCTAATGGGTGCGGACTACTATGAGACTGAAGCTGATAAGAAACTCCTTGCTGAA
AAAGGTGGCATTCCCATTGGTATTGGAAAGAATTCACACATCAAAAGAGCAATCATCGAC
AAGAATGCTCGTATTGGAGATAACGTGATGATAATCAATGTTGACAATGTTCAAGAAGCG
GCGAGGGAGACAGATGGATACTTCATCAAAAGTGGCATCGTAACTGTGATCAAGGATGCT
TTACTCCCTAGTGGAACAGTCATATGA

Homology of Contig U35_731 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g25734.2	480	protein\|glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g22330.1	518
Arabidopsis v10	AT5G48300.1	520	\| Symbols: ADG1, APS1 \| ADP glucose pyrophosphorylase 1 \| chr5:19570326-19572557 FORWARD LENGTH=520