barSeed - Barley Seed Development Database

Probe CUST_41488_PI390587928

Source Contig U35_732

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41488_PI390587928	Hv_44K_v2	CCATGCTATTTGTTGTATGGTTCGTGCAAAACCTTGCGATGCTTTATATATGCTTTATAT	1893	GeneList: darkolivegreen MasterList: Starch_synthesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.067	0.117	0.683	1.491	1.342	2.333
Raw	2257.930	6150.407	31754.433	102044.466	33646.933	63778.567

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK253094.1	2107	2e-24	2003 - 2062	100	60 / 60	plus	ABC02267
JLOC1	JLOC1_10880.1	971	4e-23	796 - 855	98	59 / 60	plus
Harvest21	ABC02267	1991	3e-25	1862 - 1921	100	60 / 60	plus	ABC02267
Harvest35	U35_732	2022	3e-25	1894 - 1953	100	60 / 60	plus

Contig Sequence (2022 bp)

>U35_732 2022 Hv_44K_v2
GATTAGTTAAATTTACTCAGCCACACTGCACCACTCGGTGTCAGGCGTATCTCTCTCCCT
TACCCCTCGTGATCTCTCGCCACGGGAGCCCCGTGACTCGAGCTCGTCATCCACCTCAAT
GGCGATGGCCGCGGCCGCCTCCCCTTCCAAGATCCTGATCCCTCCGCACCGAGCCTCCGC
CGTGACCGCTGCCGCGTCCACCTCCTGCGACTCCCTCCGCCTCCTCTGCGCGCCACGAGG
ACGGCGCCAGCGCCCGCGCGGGTTGGTCGCGCGTCCGGTTCCGCGGCGGCCCTTCTTCTT
CTCCCCACGTGCCGTGTCAGACTCCAAGAGCTCCCAGACTTGTCTCGACCCCGACGCAAG
CACGAGTGTTCTCGGTATCATTCTTGGAGGTGGTGCAGGGACTAGATTGTATCCCCTGAC
GAAGAAGCGTGCAAAGCCTGCAGTGCCATTGGGTGCCAACTACAGGCTTATTGATATTCC
TGTCAGTAATTGTCTGAACAGCAACATATCAAAGATCTATGTGCTTACACAGTTCAACTC
AGCTTCTCTTAATCGTCATCTCTCACGAGCCTATGGGAGCAACATTGGAGGTTACAAGAA
TGAAGGATTTGTTGAAGTCCTTGCTGCACAGCAGAGCCCAGATAACCCTGACTGGTTCCA
GGGTACTGCAGATGCTGTAAGGCAGTACTTGTGGCTATTCGAGGAGCATAATGTTATGGA
GTATCTAATTCTTGCTGGAGATCACCTGTACCGAATGGACTATGAAAAGTTTATTCAGGC
ACACAGAGAAACGGATGCTGATATTACTGTTGCTGCCTTGCCCATGGATGAGGAACGTGC
AACTGCATTTGGCCTTATGAAAATCGATGAAGAAGGGAGGATAATTGAATTCGCAGAGAA
ACCAAAAGGAGAACAGTTGAAAGCTATGATGGTTGATACGACCATACTTGGCCTTGAAGA
TGCGAGGGCAAAGGAAATGCCTTATATTGCTAGCATGGGTATCTATGTTATTAGCAAACA
TGTGATGCTTCAGCTTCTCCGTGAGCAATTTCCTGGAGCTAATGACTTCGGAAGTGAAGT
TATTCCTGGTGCAACTAGCACTGGCATGAGGGTACAAGCATACCTATACGACGGTTACTG
GGAAGATATTGGTACAATTGAGGCATTCTATAATGCAAATTTGGGAATTACCAAAAAACC
AATACCTGATTTCAGTTTCTATGACCGTTCTGCTCCCATTTACACACAACCTCGACACTT
GCCTCCTTCAAAGGTTCTTGATGCTGATGTGACAGACAGTGTAATTGGTGAAGGATGTGT
TATTAAAAACTGCAAGATACACCATTCAGTAGTTGGACTCCGTTCCTGCATATCTGAAGG
TGCAATAATAGAGGACACGTTGCTAATGGGTGCGGACTACTATGAGACTGAAGCTGATAA
GAAACTCCTTGCTGAAAAAGGTGGCATTCCCATTGGTATTGGAAAGAATTCACACATCAA
AAGAGCAATCATTGACAAGAATGCTCGTATTGGAGATAACGTGATGATAATCAATGTTGA
CAATGTTCAAGAAGCGGCGAGGGAGACAGATGGATACTTCATCAAAAGTGGCATCGTAAC
TGTGATCAAGGATGCTTTACTCCCTAGTGGAACAGTCATATGAAGCAGATGTGAAATGTA
TGCCAAAAGACAGGGCTACTTGCGTCAGTCTGGAATCAACCAACAAGGCCGCGAAGAGAT
CATAAAATAAAAAGGAGTGCCATGCGAGTCACTTCTACACCCTTTTCCCCCCTTGATGTA
TTAGGAACTGTGATGTACAAGCAACTGTGATGCACTTACGCGAAGTGCCCCTGGATTCAG
CTTTCTCTTTGCTTGTAACTGGTTTCCAGCAGACCATGCTATTTGTTGTATGGTTCGTGC
AAAACCTTGCGATGCTTTATATATGCTTTATATATAAAACAAGAAAAAAAAAAAATCCCC
GCGCGTTGCTGCGGCACATTTAGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_732 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g25734.1	515	protein\|glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g22330.1	518
Arabidopsis v10	AT5G48300.1	520	\| Symbols: ADG1, APS1 \| ADP glucose pyrophosphorylase 1 \| chr5:19570326-19572557 FORWARD LENGTH=520