- Probe CUST_4147_PI390587928
- Source Contig U35_28732
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4147_PI390587928 | Hv_44K_v2 | ATGCATATCTTAATATGGCATCTGCCTTATCTGAGGCTGATGGGATCGACTACACCAATC | 504 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK354669 | 1720 | 7e-23 | 1142 - 1201 | 98 | 59 / 60 | plus | ABC07885 |
| MLOC | AK353715 | 1718 | 7e-23 | 1104 - 1163 | 98 | 59 / 60 | plus | ABC07885 |
| MLOC | MLOC_72112.3 | 449 | 7e-23 | 345 - 404 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_72112.2 | 1380 | 7e-23 | 137 - 196 | 98 | 59 / 60 | plus | ABC07885 |
| MLOC | MLOC_72112.4 | 618 | 7e-23 | 231 - 290 | 98 | 59 / 60 | plus | ABC07885 |
| MLOC | MLOC_72112.1 | 444 | 7e-23 | 203 - 262 | 98 | 59 / 60 | plus | ABC07885 |
| MLOC | MLOC_72113.2 | 2270 | 7e-23 | 2166 - 2225 | 98 | 59 / 60 | plus | ABC07885 |
| JLOC1 | JLOC1_47968.3 | 525 | 4e-23 | 179 - 238 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_47968.2 | 1393 | 4e-23 | 1047 - 1106 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_47968.1 | 478 | 4e-23 | 132 - 191 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC27765 | 623 | 3e-25 | 505 - 564 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC26816 | 692 | 1e-23 | 473 - 532 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC07885 | 1128 | 1e-23 | 456 - 515 | 98 | 59 / 60 | plus | ABC07885 |
| Harvest35 | U35_28732 | 623 | 3e-25 | 505 - 564 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28134 | 692 | 1e-23 | 473 - 532 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_17453 | 1603 | 1e-23 | 931 - 990 | 98 | 59 / 60 | plus |
Contig Sequence (623 bp)
>U35_28732 623 Hv_44K_v2 GGTCTAAAGCGTGCGAATTTGTCTATAATGATGCAAAGTTTGTGAATGAAAGAGCTCAGA GTGATATTCTTTTGCTTTCACGTGGAATCACAAGGTTGAACAAACGTGCATCTAAGGATG TTGCTGTATTAGGTTTGGGGTTTCTCAAGCTTGATGCTCGTGCAAGGAAGGACACCCAAA AGATTGACAACAGTGTGAAGGAACGGGCAGCCCACCTGACAAATTTTGCTAGAATATTGA AGGAGCGAGCTCATTCGGACTTGAAGAAAGCAGCAGATCAACATTGGAGTGATGGAGCTT TGGAGGCAGATCTGCGACGAGCTGACATGGTTGTTCGACGACGTGCCATGGAGGATGCTT TCATGGCTTTAAAGTTTGTTCGGGATATTCATGACATGATGGCAACCAAACTACAATATC AGTTCATCACACTCGAGAAAAATGGGAAGATTCTTAAGTTGTTCCCTCGTGAAGTTTCTA CTGATCAAATCGCTGCCATAGAGGATGCATATCTTAATATGGCATCTGCCTTATCTGAGG CTGATGGGATCGACTACACCAATCCCGAGGAGCTTGAATTATTAGTAGCGGCTCTTATTG ACCTGGATGCCATGGATGGGAAA
Homology of Contig U35_28732 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g05600.5 | 432 | 8e-103 | protein|ATA15 protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g10770.2 | 384 | 8e-113 | |
| Arabidopsis v10 | AT1G66330.1 | 417 | 5e-77 | senescence-associated family protein | chr1:24729880-24732144 REVERSE LENGTH=417 |