barSeed - Barley Seed Development Database

Probe CUST_41479_PI390587928

Source Contig U35_741

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41479_PI390587928	Hv_44K_v2	AATAAAACTCAAGTGCTTGGCTCATGCCAACGCCAAAAGATGAGCCTCCTCATCGATTTC	1052	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.038	0.028	0.288	1.869	2.440	3.451
Raw	5.963	4.668	78.501	753.708	353.501	540.882

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_8067.1	1751	8e-25	936 - 995	100	60 / 60	plus
Harvest21	ABC02616	1101	3e-25	1033 - 1092	100	60 / 60	plus	ABC02616
Harvest35	U35_741	1121	3e-25	1053 - 1112	100	60 / 60	plus

Contig Sequence (1121 bp)

>U35_741 1121 Hv_44K_v2
GGGGCTCACTACAAGCATCACAGCACCCGCGGTGACCTTCGCCACCGCATCCTCCGCGCA
TTGCTCGATCGGTTTCGGTTGAGCGAACACCATGGCGCCAGGCCTCCTCCATTTCATGCT
CCTCGCAGCGCTCCTCCAGCTTCTTTCCACCACCTCCGCGGCGACCGCCGGCGACGTCGC
GACTGGCAGCGAGAAGGTGCACGTGGCGATCTACTACGAGTCGCTGTGCCCCTTCTCGAT
CCGCTTCGTGGCGAACCACCTCGTCAAGGCCTACAGGGACGGCCTACTCGACGCCGCCGA
CCTCACCCTCGTACCCTATGGCAACGCCGTGGTCGGCAGCGACGGCACCATCTCCTGTCA
GCATGGCCCCGAGGAATGCCTTCTGAACACCGTGGAGGCATGCGCCATCGAAGCATGGCC
GGATGTGAAAGTGCATCTCGGTTTCATTTACTGCGTGTCGGACCTGGTGATGAAGAACAA
GCACCGGGAGTGGGAGTCGTGCTTCCAGAAACAGGGGCTTGATCCCAAGGCAGTCACGGA
GTGCTACAAGGGCGAGCGTGGCCACAATCTTTCGCTCGAGTACGGGAGACAGACACATGA
GCTCGTGCCGCCTCACCAGTTCGTTCCGTGGGTGGTTATCGACGGCAAGCCGCTCCTCGA
CAATTACCGGAACTTCGAAGCTTACATCTGCAAGGCGTCCAAGGGATATCCCCTCAAGGC
GTGTCAAGACCTGGGCCTCGAGGCAGACAACGATGTCTACGGCCGACTTTGATCGTGCTG
ATGATGATGCCATCGGCAAGAATCGGATGGTCTTGCCGGATGGTGATAATAATTGATGGA
TTATGTTTCCTTTTGGGGATCATACATCTGAACACAGGGCAGTTCAATCTCTCTGTTATT
AAGGTTAATAAATTGAGTGGTTCTGCTCATAAACTGGTCTTTTTCTGGACAAACAAGGAA
AAGAACTACCATTTTTGTTGATTGAAAAAAAATGTTTAGACAAAAGCCGCAATGCGACAA
AAGAGAATTCAAAGGGGCTACTCTCGCAACGTAATAAAACTCAAGTGCTTGGCTCATGCC
AACGCCAAAAGATGAGCCTCCTCATCGATTTCCGCAACAAA

Homology of Contig U35_741 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g18454.1	266	2e-91	protein\|gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed
Brachypodium v1_2	Bradi1g65250.2	244	4e-83
Arabidopsis v10	AT1G07080.1	265	4e-61	Thioredoxin superfamily protein \| chr1:2170069-2171861 FORWARD LENGTH=265