barSeed - Barley Seed Development Database

Probe CUST_41478_PI390587928

Source Contig U35_742

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41478_PI390587928	Hv_44K_v2	ATGGTGCCATCACCTGTCAGCATGGCCCCGATGAATGCCTTCTGAACAACGTGGAGGCTT	299	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.116	0.162	0.406	1.813	2.802	4.646
Raw	146.576	341.100	735.367	5104.360	2782.170	5027.510

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56128.1	1248	7e-23	715 - 774	98	59 / 60	minus	ABC02614 ABC02616 ABC02617
JLOC1	JLOC1_36284.1	1351	4e-23	522 - 581	98	59 / 60	plus
Harvest21	ABC02615	631	3e-25	300 - 359	100	60 / 60	plus
Harvest35	U35_742	631	3e-25	300 - 359	100	60 / 60	plus

Contig Sequence (631 bp)

>U35_742 631 Hv_44K_v2
CTTCTCTGCACCCTCTGCCCCTTGATCGACCGGAGGAGGAAACCCCATGGCCGCCCGCCC
CCATCGTTTCCTCCTCCTCCCTGTGCTACTCCTGCTGCTCAGTGCCTCCTCCGCGAGCGC
CAATGGCGATGTTGTCACGGCGGCGAGCGGGAAGGTGAACATGGCGCTCTATTATGAGTC
GCTGTGCCCCTTCTCAGCGCAGTTCGTGGTGAACAGCCTCGCCAGAGTCTTCAAGGACGG
ACTCCTTGACGCCGCAGACCTCACCCTGGTTCCCTACGGCAACGCCAAGGTCGACGCGCA
TGGTGCCATCACCTGTCAGCATGGCCCCGATGAATGCCTTCTGAACAACGTGGAGGCTTG
CGCCATCGAGGCCTGGCCGGATTTGAATGTGCATTTCGGTTTCATCAACTGCGTGGAAGA
CCTGGTGATGAACCGCAAGCGCGAGGAATGGCAGTCGTGCTTCCAGAAACAGGGGCTTGA
CCCCAAGCCTGTCATGGAGTGCTACAACAGTGAGCATGGCCACAAGCTTTCGCTCAAGTA
TGGGAAACAGACTGATGCACTTGTGCCTCCGCACAAGTACGTTCCATGGGTGGTGGTTGA
TGGCGAGCCGCTCTACGAGGATTACGAGAAC

Homology of Contig U35_742 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g18454.2	257	2e-88	protein\|gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed
Brachypodium v1_2	Bradi1g65250.3	244	2e-85
Arabidopsis v10	AT1G07080.1	265	2e-64	Thioredoxin superfamily protein \| chr1:2170069-2171861 FORWARD LENGTH=265