barSeed - Barley Seed Development Database

Probe CUST_41477_PI390587928

Source Contig U35_743

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41477_PI390587928	Hv_44K_v2	GCACATCGGTACTAAAGTGAGTTATGGTGATGTAAATTTCTGTTCAAGTTAATATGGAGA	1014	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56128.1	1248	2e-24	117 - 176	100	60 / 60	minus	ABC02614 ABC02616 ABC02617
JLOC1	JLOC1_36284.2	1358	8e-25	1127 - 1186	100	60 / 60	plus
JLOC1	JLOC1_36284.1	1351	8e-25	1120 - 1179	100	60 / 60	plus
Harvest21	ABC02617	1085	3e-25	933 - 992	100	60 / 60	plus	ABC02617
Harvest35	U35_34042	716	3e-25	209 - 268	100	60 / 60	plus
Harvest35	U35_743	1170	3e-25	1015 - 1074	100	60 / 60	plus

Contig Sequence (1170 bp)

>U35_743 1170 Hv_44K_v2
GACGTGCATATGCCAGCACCACACACCACTGCTCCTACGTACTGTCGTACTGTAATGTAT
GTTCCCGTGATCCCGTCTATGCCCATCGACATCGACACAAACTCGCTGCTCTCCGGTTGA
CCAGGAGAGGCGAAGTCCTCTCGCAGGACGCGATCCCCTGCGCGCCATGGCCGGTTCCCG
TCGCGCCCTCCGCCTCCGCCTCGTCCTGCTCCTACCGGCCGTCATCGGCGCCCTCCTGCC
GCCGGCCGCTGCCGCGGGGCCGCCCAAGGTCTCCCTGGCGCTCTACTACGAGTCGCTCTG
CCCCTACTGCTCGCGCTTCATCGTCACCCGCCTCGCCGGGATCTTCGACAGCGGGCTCAT
CCACGCCGTCGACCTCCTGCTCGTCCCCTACGGCAACGCCCACGTCCGCGGCGCCAACAA
CACCATCACCTGCCAGCATGGCCCCGATGAATGCCTTCTGAACAACGTGGAGGCTTGCGC
CATCGAGGCCTGGCCGGATTTGAATGTGCATTTCGGTTTCATCAACTGCGTGGAAGACCT
GGTGATGAACCGCAAGCGCGAGGAATGGCAGTCGTGCTTCCAGAAACAGGGGCTTGACCC
CAAGCCTGTCATGGAGTGCTACAACAGTGAGCATGGCCACAAGCTTTCGCTCAAGTATGG
GAAACAGACTGATGCACTTGTGCCTCCGCACAAGTACGTTCCATGGGTGGTGGTTGATGG
CGAGCCGCTCTACGAGGATTACGAGAACTTTGAAGCTTACGTCTGCAAGGCGTACAAGGG
CCATCCTCCCAAGATTTGCCAAGGGCTGGGCCGTGACTACCCAATCGTACAACAGGTGGT
GGAGGTAGGCAACGGTGTCACCTACAACTCTGGCGATTTCGAGCTCGATGACAAGATTAA
GATGGTGTCGGCTGATGGCAATTGATAAATTGTATGTCTCCTTTCGGAGCTCCTATACCG
ATATATGTGAACATAGGACAGTTTCATCTTTCTGTTCAGGTTAATTATGGAGATGCACAT
CGGTACTAAAGTGAGTTATGGTGATGTAAATTTCTGTTCAAGTTAATATGGAGATATACG
TGAGCATTGTCAGTTAAAAAAAAAAAAAAAAGTTATTCTTTTAGGCGGTGTTCAAGTTAA
TATGGAGATATGCAATGTGCATAATAATGT

Homology of Contig U35_743 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g18454.1	266	1e-111	protein\|gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed
Brachypodium v1_2	Bradi1g65250.3	244	9e-117
Arabidopsis v10	AT1G07080.1	265	5e-73	Thioredoxin superfamily protein \| chr1:2170069-2171861 FORWARD LENGTH=265