barSeed - Barley Seed Development Database

Probe CUST_41470_PI390587928

Source Contig U35_2378

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41470_PI390587928	Hv_44K_v2	ATACTGCTCCTGCAATGTTCACTAGTACTGTATGCAAATTAAGAAGCATATTTTCTGCAA	890	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.842	1.695	0.961	0.961	0.502	0.665
Raw	208.779	301.509	149.732	235.653	43.528	61.911

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_40956.2	1154	8e-25	1053 - 1112	100	60 / 60	plus
JLOC1	JLOC1_40956.1	1179	8e-25	1078 - 1137	100	60 / 60	plus
Harvest21	ABC32374	438	3e-25	16 - 75	100	60 / 60	minus	ABC32374
Harvest35	U35_2378	965	3e-25	891 - 950	100	60 / 60	plus

Contig Sequence (965 bp)

>U35_2378 965 Hv_44K_v2
GCCCCAAGAGCCCTCTCGCCCGAAATACCACGGCTCTTCCTCTCTTCCTTGTCTGAGATC
CTGAGCCGGGATGGGAGAAGCCAAGGACAACGAGGTGTACGAGGAGGATCTTGTCGACTA
CGATGAGGAGGTGGAGAACGCCGTCGACGGCGCAGCCGCCAACCCTTCCGTTGACGTCGT
CAAGAAGGGGTACGTGGGAATCCACAGCTCAGGGTTCAGGGACTTCCTGCTCAAGCCAGA
GCTGCTCCGTGCGATCCAGGACTGTGGGTTTGAGCATCCTTCCGAAGTGCAACATGAATG
CATCCCTCAAGCCATTCTTGGAATGGATGTCATCTGTCAAGCAAAATCTGGGATGGGCAA
GACTGCTGTTTTTGTCCTCTCAACTCTCCAGCAGATCGATCCGGTTGCTGGTCAAGTAGC
TGCACTTGTGTTATGCCATACACGAGAGTTGGCATTGGACGACCACCTGGGAAGATGGAT
CCTGCCAACTTTGTTCTCAGGCCATTCACCAAAAAAGAACAAGAAGAGCTTGATTTCACA
TTCCATAGGGGCTTGGATGCAATAAGAATAATGACACTTGAAGGATTCAACAAGAGCGCT
ACTTTCGTGAACACCGCCCAATCATCCGAAATGCTGAATAGATGACAAACCAATTGATTC
ATTTTTTGTGCCAAAGGGATTTGAGTTCAAGTGATGAATTAAAGTTAAGGAACTAGATAG
GGGTTTTCAGTTATTTGCATTGTGGCCATCTTTCCTGTTAGAAGACCCCCACACTGAAAA
CCAAAGCTTTATTTGTGCATATACGACAATGGTGGGTGATAATAATTTTATTTATACCAG
CAATGTGAAACATTGTGAACTAATGGATGCCATAGCATTTGAGTTTATGTATACTGCTCC
TGCAATGTTCACTAGTACTGTATGCAAATTAAGAAGCATATTTTCTGCAAAAAAAAAAAA
AAAAA

Homology of Contig U35_2378 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi2g40780.3	429	3e-67
Arabidopsis v10	AT5G11170.1	427	9e-51	DEAD/DEAH box RNA helicase family protein \| chr5:3553334-3556646 FORWARD LENGTH=427