barSeed - Barley Seed Development Database

Probe CUST_41468_PI390587928

Source Contig U35_2380

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41468_PI390587928	Hv_44K_v2	ATGTACGATGATCTGGATTTACCCTTCGCGAAATTGCGTCTACTGCCAAAAGGTGGACAT	497	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62570.3	1034	2e-24	495 - 554	100	60 / 60	plus	ABC32374
MLOC	MLOC_62570.1	1198	2e-24	582 - 641	100	60 / 60	plus	None
MLOC	MLOC_62570.4	1106	2e-24	563 - 622	100	60 / 60	plus	ABC32374
MLOC	MLOC_62570.5	631	2e-24	226 - 285	100	60 / 60	plus	ABC32374
MLOC	MLOC_62570.2	925	2e-24	580 - 639	100	60 / 60	plus	None
JLOC1	JLOC1_40956.2	1154	8e-25	481 - 540	100	60 / 60	plus
JLOC1	JLOC1_40956.1	1179	8e-25	506 - 565	100	60 / 60	plus
Harvest21	ABC34014	642	3e-25	478 - 537	100	60 / 60	plus
Harvest35	U35_2380	662	3e-25	498 - 557	100	60 / 60	plus

Contig Sequence (662 bp)

>U35_2380 662 Hv_44K_v2
CTCCGAGTTCAGGCCCCTGTCCCATCCAAATTACTACTGGTGCCCAATTGGTGGTGCCGG
CGACAGCGGCGGCGATGCAGCTGCTCTCCGGCGCCTCGGCCTCCCGCTTCCCCTCGCCCC
TCCCCTTGTTCGCGCGGGTAAGGCCTAGATGTGTGTCGCGCTATTCCTCCGCCTCCGCTT
GCCGGGCAGCCTCCTCGTCAGCTGCGCCCGTCGGTGACGGCGGCGCGCGGAAGCCGTGGC
TGTTCGTTGGGCTAGGGAACCCCGGGAAGATGTACCAGAGGACTCGCCACAACGTTGGAT
TCGAGATGATTGATGCTATAGCAGAAGCAGAGGGTGTATCACTCAGCGGTATGCAGTTCA
AGGCAATGGTTGGCAAAGGTCGTATTGGAGATGTTCCTATCATGCTTGCCAAGCCGCAAA
CGTTTATGAATGCAAGCGGTGAGTCTGTTGGGCAGCTGGTTTCATATTTCAAGATACCAC
TTAATCAAGTTGTTGTGATGTACGATGATCTGGATTTACCCTTCGCGAAATTGCGTCTAC
TGCCAAAAGGTGGACATGGCGGGCATAATGGGATGAGAAGCATTATCAACCATCTCAAAC
AAAATCGTGATTTTCCACGTCTAAGAATTGGCATTGGACGACCACCTGGGAAGATGGATC
CT

Homology of Contig U35_2380 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g49900.1	251	8e-108	protein\|peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed
Brachypodium v1_2	Bradi2g47250.1	250	3e-113
Arabidopsis v10	AT1G18440.1	288	6e-80	Peptidyl-tRNA hydrolase family protein \| chr1:6345994-6347686 FORWARD LENGTH=288