barSeed - Barley Seed Development Database

Probe CUST_41460_PI390587928

Source Contig U35_2388

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41460_PI390587928	Hv_44K_v2	TGATATGGAACAGGGTTATTTATGTGGAACGATGGAGGCACTTAATGTTCCCTTAGCCGA	299	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.389	0.556	1.234	1.681	0.867	1.232
Raw	72.038	158.356	313.044	678.422	123.765	189.232

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369521	961	2e-24	283 - 342	100	60 / 60	plus	ABC06613
MLOC	MLOC_76498.5	2023	2e-24	1144 - 1203	100	60 / 60	minus	ABC06613
MLOC	MLOC_76498.3	1136	2e-24	933 - 992	100	60 / 60	minus	ABC06613
MLOC	MLOC_76498.1	2357	2e-24	1483 - 1542	100	60 / 60	minus	ABC06613
JLOC1	JLOC1_51010.1	1278	8e-25	422 - 481	100	60 / 60	plus
Harvest21	ABC06613	958	3e-25	270 - 329	100	60 / 60	plus	ABC06613
Harvest21	ABC06612	997	3e-25	292 - 351	100	60 / 60	plus
Harvest35	U35_2388	1010	3e-25	300 - 359	100	60 / 60	plus

Contig Sequence (1010 bp)

>U35_2388 1010 Hv_44K_v2
GGGGTCAGACACGACTCTAGGCACCAAAACGCCGCACTCCTTCTCGAAACATCCATCCAG
CCTCGTCGCCGGCGACCTCACCCGCCGCCGCCGCCGCCGCCGCAGAAGATGCCGGTCAGG
GTGGTCGACACCGCCACCCCTTCCTCGCAGCCATCCTCAGGTCAAGATGCAAATGCTGTG
CAGCCGTCTCCTCCTAGCTGTTCACTCTTAACTGCTGGAAGATGTTTTGCAGGAACTCAG
AATGTTTCAAGTTTACAAAAAGATGAAGCATGGAAAGTCAATGTTCGTATCCATGGTTGT
GATATGGAACAGGGTTATTTATGTGGAACGATGGAGGCACTTAATGTTCCCTTAGCCGAC
ACACCTGTGGTGACATTCTGGGAGGGGGAGATAGTAGATGCTAAAAATTATACTTTTTTT
ACTGGCAAGTGGGAGGCATCAGCAGAGGATGATGTAAGACACTGGTCCAAGTTCTCATCA
TTTACCCCTCTTCTGAGTCAGATTGAGGCAGATGGTGGCAAGTCTGTGGACCTTAGCAAC
TATCCTTTTATATTTATGAGATGGAAAGAGCAGTACTTTGTCAATGTGGGAGTGGACTGT
GGGTTGACCATAGCTGGTTTCTATTACGTCTGCTTTTCTTGTAGCGATGGATCCATTAGT
GGCTTTTATTACGACCCAAACAGCAGTCCATTTCAGAAGCTTGAATTGAAGTGCACCAAC
GAGAAACAATCTGGGTTCACCTTTTCTTCATATGAGCTGCAGTGACATGCATGACGCTAT
TAATTGAAGTGGCAGAGATTACACAGGGGAACTTTCGGCGCTTGCCAATATGAACAAATA
CTGTGTGTGTATTAAACCCGTAGTTCCTGATGTTCCTTAAAAATAGTTGAGATGTTATGT
ATGTACGGTTGTGCCAGTGAATGTTGCAAGACCAAACAATTATGTAACTTATCCTTTTGC
AATCTCAGTATTTTGGGGAAAAAAAAAAAAAAAAATTTCTTTATTTTATT

Homology of Contig U35_2388 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g47550.1	219	5e-153	protein\|expressed protein
Brachypodium v1_2	Bradi2g02940.1	219	7e-159
Arabidopsis v10	AT2G37680.1	215	3e-121	CONTAINS InterPro DOMAIN/s: Vacuolar import/degradation protein Vid24 (InterPro:IPR018618); Has 318 Blast hits to 317 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 184; Plants - 51; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). \| chr2:15803500-15805515 REVERSE LENGTH=215