barSeed - Barley Seed Development Database

Probe CUST_4145_PI390587928

Source Contig U35_28734

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4145_PI390587928	Hv_44K_v2	CTAGTTTATCTGCACTACGCAAGTCACTAGCAAGCAATTTTTCTCCAAAATCCTGTTCTC	466	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364487	3265	2e-24	1224 - 1283	100	60 / 60	plus	ABC15741
MLOC	MLOC_13050.5	2319	2e-24	197 - 256	100	60 / 60	plus	ABC15741
MLOC	MLOC_13050.4	1672	2e-24	198 - 257	100	60 / 60	plus	ABC15741
MLOC	MLOC_13050.6	2255	2e-24	183 - 242	100	60 / 60	plus	ABC15741
MLOC	MLOC_13050.1	1549	2e-24	198 - 257	100	60 / 60	plus	ABC15741
MLOC	MLOC_13050.2	1666	2e-24	198 - 257	100	60 / 60	plus	ABC15741
MLOC	MLOC_13050.3	1457	2e-24	198 - 257	100	60 / 60	plus	None
JLOC1	JLOC1_8795.6	2245	8e-25	197 - 256	100	60 / 60	plus
JLOC1	JLOC1_8795.5	1916	8e-25	197 - 256	100	60 / 60	plus
JLOC1	JLOC1_8795.4	2041	8e-25	197 - 256	100	60 / 60	plus
JLOC1	JLOC1_8795.3	2164	8e-25	197 - 256	100	60 / 60	plus
JLOC1	JLOC1_8795.2	2156	8e-25	197 - 256	100	60 / 60	plus
JLOC1	JLOC1_8795.1	1952	8e-25	197 - 256	100	60 / 60	plus
Harvest21	ABC27767	526	3e-25	467 - 526	100	60 / 60	plus
Harvest35	U35_28734	526	3e-25	467 - 526	100	60 / 60	plus

Contig Sequence (526 bp)

>U35_28734 526 Hv_44K_v2
GAGGCCATGGAGTACCTGCATTGTCTCTTTATCAGACCAGACGTGGAGCACTCTCCGCGG
GAGAGCGAGTTCCACCTCGGTCCTGGTGCCGCAGTGGAGGTGTACTGTGACGGCGCTTGG
TCACCAGGGGTGGTGCAAAGGGCTGTTGGCGAGGGTGAGTACGAGGTTAGCATCAATGGG
AAGGAGGGAGAGCTGTTACTGAAGAAGGTGCCAGAGTTGCTCAAGCCTCAATACAAGTGG
AATGGCAAGCATTGGAGGATTGTAAGCCCTAAGAGACAAGGTAATAGGCGGCAGTCTGTA
TCTGGAAAACGTCCAAGCTCAGCTGTTGAGGTGGCATCCAATGATGATGAAAATGGACAT
CATACTCAATCTCCAGCCACAAAAAGGTCAAGGAAAGAACTGCCACGAAAAAAACATGAA
GAATTAACTGAAGGTTCTGAACATGTGTTGGAGTCTGAGATGGACACTAGTTTATCTGCA
CTACGCAAGTCACTAGCAAGCAATTTTTCTCCAAAATCCTGTTCTC

Homology of Contig U35_28734 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g35050.2	810	6e-55	protein\|expressed protein
Brachypodium v1_2	Bradi4g16400.1	462	3e-72
Arabidopsis v10	None