barSeed - Barley Seed Development Database

Probe CUST_41457_PI390587928

Source Contig U35_2391

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41457_PI390587928	Hv_44K_v2	TAGTTCCATCTATTCCGGATCATGCTAGCACTATACAAAATTCAGGATCTCCAGATTTGA	784	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360084	3633	2e-24	572 - 631	100	60 / 60	plus	ABC06680 ABC07757
MLOC	MLOC_47469.3	4449	2e-24	866 - 925	100	60 / 60	minus	ABC06680
MLOC	MLOC_47469.2	4551	2e-24	872 - 931	100	60 / 60	minus	ABC06680
MLOC	MLOC_47469.1	4585	2e-24	889 - 948	100	60 / 60	minus	ABC06680
JLOC1	JLOC1_30604.2	4660	8e-25	3639 - 3698	100	60 / 60	plus
JLOC1	JLOC1_30604.1	4586	8e-25	3639 - 3698	100	60 / 60	plus
Harvest21	ABC06679	844	3e-25	785 - 844	100	60 / 60	plus
Harvest35	U35_2391	844	3e-25	785 - 844	100	60 / 60	plus

Contig Sequence (844 bp)

>U35_2391 844 Hv_44K_v2
GCTGTTGGGGATGCCACCCATAGCCAGATTGTGAAGTCTCTTCCCAGGGACCTTTCATCA
AGTGACCAACTTCAAAGTGTTCTAGATTCACTTGCAGTTTACTCTAATCCATCTGGAATG
AAACAGGGCAAGTATGTGCTTCGCAAAGCATTCTGGAAGGAGTTGGACTTGTATCACCCG
CGCTGGAATTCCAGAGAAATACAGATTGCTGAAGAGAGATATTACCGTTTTTGCAAAGTT
TCTGCTCTTAACGCTCAACTACCTCAGTGGACTCATGTTTTTAGCCCTCTGCGCAGTATT
TCTAAAATTGCCACCTCCAAAGCTGTCCTTCAAATTGTTCGTGCTGTTCTCTTCTATGCT
GTTTACACGGACGCATCATCGGTATCACGTGCCCCGGACAATGTTCTGGTGATGGGTTTG
CACCTGCTTTCGTTGGCACTTGACATATGTGAATCCGAGAGTCAAATGTATGCGGACAAA
TATGGGATGGACATAGTGCAGCATGATGCTGAATCGTGGGTTGTCCTGTCATCGTATGCA
GAAGAGGCTTTTCCCATATTGACCTACTCTACTGAATCAGTCTCTCCGGACTCTGACGGA
GTAAAGAACGAGAGCATGCTAACCTTGCTTGTTTCACTCATGCGCAAGTACAAGGAAGAG
AATGACAGCACTTTTTCTGGATCCAAGTACTGCAATGTTCCATCTCTAGTTGAGAGTTTG
TTAAAAAGATTTGCCAAGTTAAGTAAGCAGTGCATGTCTGCCTTGAGACAAATGGCACCG
CATGTAGTTCCATCTATTCCGGATCATGCTAGCACTATACAAAATTCAGGATCTCCAGAT
TTGA

Homology of Contig U35_2391 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05500.2	2057	2e-135	protein\|zinc finger protein, putative, expressed
Brachypodium v1_2	Bradi2g03180.1	2081	1e-146
Arabidopsis v10	AT5G02310.1	2006	2e-57	\| Symbols: PRT6 \| proteolysis 6 \| chr5:474279-482552 FORWARD LENGTH=2006