barSeed - Barley Seed Development Database

Probe CUST_41456_PI390587928

Source Contig U35_2392

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41456_PI390587928	Hv_44K_v2	TATTGTATTGGGCTATGCAATGCATGATGCTTCTGATTGCCATTTGGCCGGTAGAAAAAA	1472	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.617	2.599	0.553	0.734	1.032	0.919
Raw	17.527	28.828	4.158	8.942	3.288	3.298

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55623.1	4481	9e-22	4345 - 4399	100	55 / 55	plus	ABC06680 ABC06681
MLOC	MLOC_55623.2	4645	9e-22	4509 - 4563	100	55 / 55	plus	ABC06680 ABC06681
JLOC1	JLOC1_35907.3	4116	5e-22	3953 - 4007	100	55 / 55	plus
JLOC1	JLOC1_35907.2	4585	5e-22	4422 - 4476	100	55 / 55	plus
JLOC1	JLOC1_35907.1	4339	5e-22	4176 - 4230	100	55 / 55	plus
Harvest35	U35_2392	1543	3e-25	1473 - 1532	100	60 / 60	plus

Contig Sequence (1543 bp)

>U35_2392 1543 Hv_44K_v2
CTTTCGTCAAGTGAACAACTTCAAATTGTTCTAGATTCACTCGCAGTTTATTCTGATCCA
TCTGGAAAGAAAAGGGCAAGTATGTGCTTCGCGAAGCATTCTGGAAGGAATTGGACTTAT
ATCACCCGCGCTGGAGTTCGATGGAATTAGAGATTGCTAAAGAGAGATATTACCGTTGTT
GCAAAGTTTCTGCTCTTGGCGCTCAACTACCTCAATGGACTCATGTTTTTAGCCCTCTGC
GCAGTATTTCTAAAATTGCCACCTCCAAAGCTGTCCTTCAAATTGTTCATGCTGTTCTCT
TCTATGCTGTTTACACCGACACATCATCGGTATCACGTGCCCCTGACAATGTTCTCGTGA
CTGCTCTGCACCTGCTTTCGTTGGCACTTGACATATGTGAATCAGAGAGTCAAATGTCTG
CGGACCAGTATGGGATGGACTTAGTGCAGCATGATGATGAATCATGGGTTGTTCTGTCAT
CTGATGCAGTAGAGGCTTTTCCCATATTGACCTATTCTACAGAACTAGTCTCCCCAGAGT
CTGACAAACTAAAGAAGGAAAGCATGATAACCTTGCTTGTTTCACTAATGCACAAGGAAA
AGAATGACAGCACCTTTTCTGGATGCAATATTCCATCTCTAGTTGAAAGTTTGTTGAAGA
GATTTGCCAAGTTAAGTAAGCAGTGCATGTCTGCAGTAAGACAAATGGCACCACAAGTAC
TCCCATCCATTCCTGAGCATGCCAGCGCCAAACAGAATTTAGGATCTCCAGATTCGACGG
GAAACAGCCAATGCAAAGCTACAATCATGGCAAAAATGGGAGCAGAGCAGTCAAAACTTG
CTGAAAGTATGAAGTCGTCAGGAAATGAAGGGCCTGATGTTCCAACATTTGAGCCAGATG
CACCTAGATCAACTGCCATCGAGATGCGACCATTTTGCTCTCTTTGCCAGGATTCGGATT
CCAAAAGTCCACTCTGCTGTTTGATTCGCCTTCAGGCTGCTCTGGAAACTATGATGGCAG
AGACTGCTGAGGATGGTCAGACCCCAAGATCAGTTGCAGAGTTCGCTTCCAACATACTCT
CCCATGTCGGTTCCACAGGCTCGTTGAAGTCGCCAGCTGTTGAAGTTCTTGAGGACAAAC
TCAGGGCGGAAAGACGGGGTGCGGCCGCGCTCCGAGAAGAAATCGACGCCTTGAAGAAGC
AGGCAGAAAAGGCCGACGCGGTCATTGCCAAAACCCAAGAAGAGATGGAGGAAGTCAGGA
AGAAGCAAGCCGAGACAGACCAGGTTCTTCAGCTTCTCCTGCGCAGGTCTCAGGGTAACC
CCGGTTCTTAGTCTCTGTTGAAACTGTGGTTCTACTGGAGTATGTCGAACTTGTTTGAGT
TTGTTGTTGTGTGAAAAACTTCGTATCTTGTGTATATGTTAAATAAAATGCGAGTTAAAT
GTTGTATTTATGTGGCATATTCAGTATTAGTATATTGTATTGGGCTATGCAATGCATGAT
GCTTCTGATTGCCATTTGGCCGGTAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_2392 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05500.2	2057	6e-130	protein\|zinc finger protein, putative, expressed
Brachypodium v1_2	Bradi2g03180.1	2081	1e-135
Arabidopsis v10	None