barSeed - Barley Seed Development Database

Probe CUST_41453_PI390587928

Source Contig U35_2395

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41453_PI390587928	Hv_44K_v2	CTTGCTGCCTTGAGTAGTAAACTGTATGCATGACCAATAAGTTCTTGGTAATAAAGATAT	1603	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.550	3.218	1.089	0.924	0.433	0.641
Raw	1015.930	1518.734	431.905	619.504	92.842	152.903

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57145.1	1816	2e-24	1628 - 1687	100	60 / 60	plus	ABC07739 ABC39188 ABC49831
JLOC1	JLOC1_36993.1	1945	8e-25	1617 - 1676	100	60 / 60	plus
Harvest21	ABC07739	1698	3e-25	1604 - 1663	100	60 / 60	plus	ABC07739
Harvest21	ABC39188	385	6e-22	36 - 95	97	58 / 60	minus	ABC39188
Harvest35	U35_2395	1718	3e-25	1604 - 1663	100	60 / 60	plus

Contig Sequence (1718 bp)

>U35_2395 1718 Hv_44K_v2
GGGAAGGTAACAGGGCCAGATATGCAGCGTCTCGCCTCCTCCCGGCGGCTCCTCCAGGCC
GCGCTCGCCCCCGGCCGGGCGCATTCCAGCCTCACCGCCGCCGCGGTCGCCGCCGCGCCG
GAGAATGGCGCCGGCGCCCCCAAGATGCCGCCGTTCGCGTACACGCCGCCGCCGTACGAC
GGGCCGCGGGTGGCGGAGATCGCCCAGAAGCGGGCCCAGTTCCTCAGCCCCTCGCTCTTC
CACTTCTACGACCGCCCCTTGAACATAGTCGATGGAAAGATGCAGTACCTGTTTGATGAG
GATGGTCGCCGCTACCTTGACGCTTTTGGTGGCATTGCTACCGTTTGTTGTGGGCACTGC
CACCCTGATGTGATTGAAGCCATAGTCAACCAGGCGAAGAAGATACAACACTCCACAGTT
CTGTATCTGAATCATGCAATTGCAGACTTTGCTGAGGCTTTGGCGGCCAAAATGCCCGGT
GATCTGAAGGTTGTTTTCTTCACAAATTCTGGCACGGAGGCAAATGAGCTTGCACTGATG
ATCGCACGGCTTTACACTGGTTGCCATGACATTATTTCGCTTAGGAATGGATACCACGGG
AATGCAGCTGCAACAATGGGTGCCACTGGTCAATGCAACTGGAAATTCAACGTTGTACAG
ACGGGAGTGCACCATGCACTTAATCCAGACCCATATAGAGGCGCTTTCGGGTCAGATGGA
GAGAAATATGCCAGAGATATTCAGGAAACCATTGACTATGGGACTACAGGAAGAGTTGCA
GGGTTCATTTCAGAAGCCATACAGGGAGTTGGTGGAATTGTGGAACTGGCGCCAGGATAC
TTACCTGTGGCCTACGATATGGTAAGGAAAGCTGGTGGCCTCTGCATTGCTGACGAAGTT
CAGGCAGGAGTTGCGCGAACTGGAAGCCACTTCTGGGGATTTGAAGGGCACGGCGTCATC
CCGGACATAGTCACAATGGCAAAGGGTATAGGGAATGGAATACCGATAGGAGCGGTTGTT
ACAACGCCTGAGATCGCTAAGGTGTTAACCCGCAGGAGTTACTTCAATACCTTTGGTGGC
AACCCTGTCAGTACTGCTGCCGGCCACGCTGTTCTCAAAGTGCTGGAGAAAGAAAAGCTC
CAGGAAAATGCGTTCGTTGTTGGCTCCTACCTGAAGGATCAACTTAACGCTCTGAAAGAG
AAGCATGACATCATCGGCGATGTTAGGGGGAAAGGCCTCCTTCTTGGTGTTGAGCTGGTG
ACCGACCGGCAGAAGAAAACCCCGGCGAAGGCTGAGATCGCGCAGGTCATGAGCCACATG
AAAGATATGGGCGTGCTGGTGGGGAAGGGCGGTTTCTTCGGCAACGTGTTCAGGGTGACA
CCGCCGTTGTGCTTCTCCAAGGAGGACTCCGACTTCTTGATCGAGGTGATGGACATCGCG
CTGTCGAAGCTGTGAAGAGGCACTGAGCTCATGCAGGCTTAGCATGGGGAGCAGCATCCA
TAAATAAGAGACGATCTGCGAGACAGCACCTCGTTGTCTCGTGTTCTGTCTTGCAAACCC
TCGAGTGCGCACATCTGATCCGTGTTTCGTCGACATTATTAGGCTTGCTGCCTTGAGTAG
TAAACTGTATGCATGACCAATAAGTTCTTGGTAATAAAGATATTCAGATGTGTTTTATTG
TAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_2395 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g39770.1	481	protein\|aminotransferase, putative, expressed
Brachypodium v1_2	Bradi2g22410.1	479
Arabidopsis v10	AT3G08860.1	481	\| Symbols: PYD4 \| PYRIMIDINE 4 \| chr3:2696754-2699087 REVERSE LENGTH=481