barSeed - Barley Seed Development Database

Probe CUST_4144_PI390587928

Source Contig U35_28735

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4144_PI390587928	Hv_44K_v2	ATTGGAGCTCTTTCCTTGATCATTTACACCCTTACTCTCATCCCTCTTCTGAAGTATGTT	647	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.792	0.676	1.679	1.439	1.424	0.915
Raw	47.375	56.770	134.347	157.791	65.474	43.521

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66784.3	1332	2e-24	489 - 548	100	60 / 60	minus	None
MLOC	MLOC_66784.1	3304	2e-24	2466 - 2525	100	60 / 60	minus	ABC00935
MLOC	MLOC_66784.2	3209	2e-24	2366 - 2425	100	60 / 60	minus	ABC00935
JLOC1	JLOC1_44045.1	3751	8e-25	1193 - 1252	100	60 / 60	plus
Harvest21	ABC27768	710	3e-25	648 - 707	100	60 / 60	plus
Harvest35	U35_28735	710	3e-25	648 - 707	100	60 / 60	plus

Contig Sequence (710 bp)

>U35_28735 710 Hv_44K_v2
GGTTTTCGGCTGGTTGGGATTGTGGATTTTTCAGCGGTGATCTCGGTTGTTCCTTGAGAT
TCAGAGGAGTCCCTGCGCTGTGATTCCTGCCGCTCCGTGCTTCCATTCCTGTTCCCTGCA
AACGCCCCCCCGGAATTCAGACCGGCCGAGGCGGCTCTTCGCTCCGGGCAGCCTCCGTCC
ATGTAAGAATTGGGGTCGGGGGCGTCGATGCGGAGATTCGAGGCCGAACTTTGAGCGAGG
AGATCAAGACCTGTTGCTTCAAGGTGGATTTTTATCCGTGAACCCGGTCTTCGGATTGGT
TGGTGCCAGGGCTGCAAGTGGAGGGCTTGTTCCTTCCTTGGGACTGTCGTTTTTGGCGAG
GATTTGAGAGCTGTGGTCGGGGTCAAAAGAGATCAATGGCGTCGCTATCCGAAAGCGAGG
GGACGAACAGGGGCGGCATGTGGGAACTGGATCAGAACCTTGATCAGCCCATGGATGAGG
AAGCCACCAGGCTCAAGAACATGTACCGAGAAAAGAAATTCTCATCACTTCTGTTACTGC
GGCTCGCGTTTCAGAGCCTTGGGGTGGTCTTTGGTGACTTGGGCACATCACCATTGTATG
TGTTCTATAATGCCTTTCCTCATGGAGTAGACAACGACGAGGATGTTATTGGAGCTCTTT
CCTTGATCATTTACACCCTTACTCTCATCCCTCTTCTGAAGTATGTTTTT

Homology of Contig U35_28735 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None