barSeed - Barley Seed Development Database

Probe CUST_41446_PI390587928

Source Contig U35_17102

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41446_PI390587928	Hv_44K_v2	TTGCATACATATGTCACTTGTACATATCAACAAGTGAACAAAGGAGAGGCAAGTGTTGAC	1452	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.647	0.540	2.857	3.012	1.152	1.137
Raw	2.957	3.332	30.856	45.657	5.693	6.693

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_17102	1534	3e-25	1453 - 1512	100	60 / 60	plus

Contig Sequence (1534 bp)

>U35_17102 1534 Hv_44K_v2
TTTTTTTTTTTTTTTTAAGCCGGCTTGCGTTGGGTCGACTTTTATGTCCGCGCCGACCTA
AACGAACAACAGCGGACAAAATGGGTCACTGCGTTGAAATTGCTCTCACTCTTCTATTAA
AAAAAGAGATTCATAAATACTCCTACTAACACAAAAGATTTATATTTATAGAATAATCCC
ACCGAAAGCGAGCACGGTGAGCCACTGCCCACCCTTACCACTAGGCTACAGCCTAGTCTT
CGTCACTCCTCTATTATAAGATAAGATGCACCTTGTCCGGTTATCCGCCCGTACCCTCAG
CTGCCGTAAAATGTCCTCCTCCATCTCAGTCTTTCCGCCGCAAGAGGGCGACGCCGAAAC
CAACGAAGAGCTCTACCGGCAGTTCACCGAACTGGCGTCCTCCTGGCCGTGCTCCCGAGG
ACTCTCGAGGGCGAACCAGCTCTACCGCCACGAGAACGGCTGGTACAGCACCCTGCCTCC
GCTGGTCGGCGCCATGGTCGCCGACGCGCGCTTCGCCGCGCGCCCCTCGGACATCGTCGT
CGCCACGATGCCCAAGTCCGGCACGACGTGGATGAAGGCGCTTCTCTACTCCACGGTCCA
CCGGAGAGAGCACCCGGCGGCCAGCCCCGACCACCCTTTCAACTCCCTCGGCCCGCACGA
GTGCATCCGCCACCTGGAGTACCAGATCTACACCCGCAACAGGGTCCCGGACCTCGACGG
GCTCCCGGACCCGAGGCTCTTCGCCACGCACGTCCCGTTCGCGTCGCTGCCGAGGTCCGT
CGCCGCGTCGGGATGCAGGATCGTGTACGTGTGCCGGGACCCCAAGGACACGCTGATCTC
GACGTGGAGCTTCGTGAACAAGTTCCGGGCCGAGGACGGGCTGGAGCCGATCTCGGTCGA
GACCGCCGTCGGCTACTTCTGCGACGGCGTGTCGGCGTCCGGGCCCTACTGGGACCACGT
CCTCGGGTACTGGCGCGCGCACTTGGCGAACCCCGCGCGGGTGCTCTTCTTCAGGTACGA
GGAGATGAGCCGGGACCCTGCGGCGCACGTGCGGAGGCTGGCGGAGTTTGTTGGACGGCC
GTTCAGCGTGGAGGAGGAGGAAGACGGCGCGGTGGACGCCATCGTCAAGCTGTGCTCGTT
CGAGCACATGACTGGGCTCGAAGCGACCAAGAGCGGCAAGACGGAGCTTGTGTTGGGCGC
TGTGGAGAACAGCTCGTTCTTCCGGCGCGGCCTGGTCGGGGATTGGGAGAACTATCTATC
GCCGGAGACAGCACGAAAGATCGACGCCATTACAGAGGCTAAGTTTAGGGGTCTCGGTCT
CTCTGTCTAGGGAGCTAGGGCGTACTAGTACTCGATGTCATGTGTCATTCAATATTTGTA
TTTTTTATAGAAAACGAGGCCATGCCTGGGCTTCTGCATCGAGATATGCATGCAACCTTT
GCTAAAAAATATTTGCATACATATGTCACTTGTACATATCAACAAGTGAACAAAGGAGAG
GCAAGTGTTGACATTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17102 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g44460.1	347	7e-178	protein\|sulfotransferase domain containing protein, expressed
Brachypodium v1_2	Bradi3g50760.1	334	8e-103
Arabidopsis v10	AT5G07010.1	359	7e-82	\| Symbols: ATST2A, ST2A \| sulfotransferase 2A \| chr5:2174960-2176039 REVERSE LENGTH=359