barSeed - Barley Seed Development Database

Probe CUST_41444_PI390587928

Source Contig U35_17104

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41444_PI390587928	Hv_44K_v2	CAAAGGGATGGAAGTCAAATAGTAGTAATCTCGATGTGTTAAAAACGAAAGTGATCATCA	1480	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354832	1560	2e-24	1480 - 1539	100	60 / 60	plus	ABC07697
MLOC	MLOC_55352.3	2000	3e-21	596 - 655	97	58 / 60	minus	ABC07697
MLOC	MLOC_55351.5	2313	3e-21	1478 - 1537	97	58 / 60	minus	ABC07697
MLOC	MLOC_55352.2	4612	3e-21	1693 - 1752	97	58 / 60	minus	ABC07697
MLOC	MLOC_55352.1	4427	3e-21	1500 - 1559	97	58 / 60	minus	ABC07697
JLOC1	JLOC1_35692.1	1995	2e-21	1341 - 1400	97	58 / 60	plus
JLOC1	JLOC1_35691.7	4273	2e-21	1389 - 1448	97	58 / 60	minus
JLOC1	JLOC1_35691.5	4347	2e-21	1463 - 1522	97	58 / 60	minus
JLOC1	JLOC1_35691.2	4014	2e-21	1492 - 1551	97	58 / 60	minus
Harvest21	ABC07697	1553	6e-22	1456 - 1515	97	58 / 60	plus	ABC07697
Harvest35	U35_48065	508	3e-25	43 - 102	100	60 / 60	minus
Harvest35	U35_17104	1579	3e-25	1481 - 1540	100	60 / 60	plus

Contig Sequence (1579 bp)

>U35_17104 1579 Hv_44K_v2
GCAAGCAACTGTACCGACTGCAACACAGTTCCTTCAGTAAGCATGAGGACTACGACCCGC
CGTCTCCCCCCAGCTCCGGCGGCGGCGGCGGTGCTCCTGGCGGCGTTGACGTGCCTCCTC
CTCCGGCCAGCCGCCGTCGCCGCGGCGGGCGGCCATGCCGCGGACCGCATAGTCCGGCTG
CCGGGGCAGCCGGAGGTGGACTTCGACATGTACTCCGGGTACATCACGGTGGACGAGGCC
GCCGGACGGTCGCTCTTCTACCTGCTGCAGGAGGCGCCCGAGGAGGCCCAGCCGGCGCCG
CTCGTGCTGTGGCTCAACGGCGGCCCCGGCTGCTCCTCCGTCGCCTACGGCGCGTCGGAG
GAGCTCGGCGCGTTCCGCGTCATGCCCCGCGGCGCCGGCCTCGTCCTCAACGAGTACCGC
TGGAACAAAGTGGCCAACGTGCTGTTCCTGGATTCGCCGGCCGGCGTGGGGTTCTCCTAC
ACCAACACCAGCTCCGACATCTACACCTCCGGCGACAACAGGACGGCGCACGACTCGTAC
GCCTTCCTGGCGGCATGGTTCGAGAGGTTCCCGCACTACAAGTACCGCGAATTCTACGTC
GCCGGCGAGAGCTACGCCGGGCACTACGTCCCGGAGCTGTCGCAGCTGGTCCACCGGAGC
GGCAACCCCGTCATCAACCTCAAGGGCTTCATGGTCGGCAACGGCCTCATCGACGACTAC
CACGACTACGTCGGCACCTTCGAGTTCTGGTGGAACCACGGGATCGTCTCCGACGACACC
TACCGCCGCCTCAAGGACGCCTGCCTCCACGACTCCTTCATCCACCCCTCGCCGGCGTGC
GACGCCGCGACGGACGTCGCCACGGCGGAGCAGGGCAACATCGACATGTACAGCCTCTAC
ACCCCCGTCTGCAACATCTCGTCGTCGTCGTCGTCGTCGTCCTTGAGCCGGCGGCGGACC
AGAGGGCGCTACCCATGGCTGACCGGGTCGTACGACCCGTGCACGGAGAGGTACTCGACG
GCGTACTACAACCGGCGGGACGTGCAGACGGCCCTCCACGCCAACGTCACCGGCGCCATG
AACTACACGTGGGCGACCTGCAGCGACACCATTAATACCCACTGGCATGATGCTCCGAGG
TCCATGCTTCCCATCTACAGGGAGCTGATTGCAGCTGGCCTAAGGATTTGGGTCTTCAGC
GGCGACACGGATGCGGTAGTCCCCTTGACAGCAACAAGATACTCCATCGGCGCTCTGGGT
CTTGCAACTACTACCAGTTGGTACCCTTGGTATGACGACCTGCAGGAGGTCGGCGGCTGG
AGCCAGGTGTACAAGGGCCTTACGCTGGTGTCCGTCAGAGGTGCGGGCCATGAGGTTCCT
CTGCACCGTCCGCGGCAAGCGCTCATACTGTTTCAGCAATTCCTGCAGGGCAAGCCCATG
CCAGGCCGTACCACAAATGTGACGGTGGCTTAACAACAAACAAAGGGATGGAAGTCAAAT
AGTAGTAATCTCGATGTGTTAAAAACGAAAGTGATCATCAATAAAGCAATAGATGCTTCT
TAAAAAAAAAAAAAAAAAA

Homology of Contig U35_17104 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g18604.1	484	protein\|OsSCP28 - Putative Serine Carboxypeptidase homologue, expressed
Brachypodium v1_2	Bradi2g35197.1	464
Arabidopsis v10	AT3G07990.1	459	\| Symbols: SCPL27 \| serine carboxypeptidase-like 27 \| chr3:2552544-2554644 FORWARD LENGTH=459