barSeed - Barley Seed Development Database

Probe CUST_41433_PI390587928

Source Contig U35_17111

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41433_PI390587928	Hv_44K_v2	AGTGGTCGTTAACTTATATGGTAAATATGTTGTGGTACGGTGAACCTTTTCTGATTCTGC	1960	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68062.1	2759	2e-24	2688 - 2747	100	60 / 60	plus	ABC06240 ABC06241 ABC41789 ABC53017
MLOC	MLOC_68062.2	2360	2e-24	2289 - 2348	100	60 / 60	plus	ABC06240 ABC06241 ABC41789 ABC53017
JLOC1	JLOC1_44997.2	2119	8e-25	1899 - 1958	100	60 / 60	plus
JLOC1	JLOC1_44997.1	2475	8e-25	2255 - 2314	100	60 / 60	plus
Harvest21	ABC06240	2080	3e-25	1961 - 2020	100	60 / 60	plus	ABC06240
Harvest35	U35_17111	2080	3e-25	1961 - 2020	100	60 / 60	plus

Contig Sequence (2080 bp)

>U35_17111 2080 Hv_44K_v2
CAGCGGAGTAGACAACGACCGGCCGATCGACCCCCAAACGGCCACTCTCGATTCGATCCG
CTCCACTGGGACGGTGCTCTCGTCGCCTCCCTCACTCTGTCCGGGCGGATTTGTGATTTG
CCCAGTGAATATGGATGGGAACAACAGAGGAGGCGGACATTCTGAAGTGTTAAAGAACTA
CAATCTGGGCAAAACATTAGGTCTAGGCACATTTGGAGATGTGAAGGTTGCAGAGCATAA
GCTTACGGGACAGAGAGTTGCTATAAAGATTCTGAACCGTCGTAAAATGGAAACTATGGA
AATGGAAGAGAAAGCAAATAGAGAAATCAAGATAATGAGATTGTTCATTGACTTCATTCA
CCCTCATATCATCCGGGTTTATGAGGTCATAGAGACACCTAAGGATATATTCGTTGTGAT
GGAATATTGCAATAATGGCGAGCTATTGGACTACATTATTGAGAATGGCCGGTTACAGGA
GGATGAGGCTCGTCGAATCTTCCAGCAGATTTTAGCTGGTGTTGAATACTGCCACAGAAT
AATGGTTGTTCATCGTGATCTAAAGCCAGAAAACCTGTTACTTGATTCCAAATATAATGT
GAAACTTGCTGACTTTGGGTTAAGTAATGTCATGCGTGATGGCCATTTTCTGAAGACTAG
CTGTGGGAGTCTAAACTATGCTGCACCAGAGATTATCTCAAGTAAATTATACGCTGGACC
TGAGGTTGATGTTTGGAGCTGTGGGGTGATACTTTATGCTCTTCTTTGTGGCTCTGTTCC
ATTTGATGATGACAATATTCCTAGCCTGTTCAGAAAGATAAAGGGAGGTACTTATATCCT
TCCAAGCTATTTATCTGATTCTGCAAGGGATTTGATCCCAAAATTGCTTAATATTGATCC
AATGAAGAGGATCACAATTCATGAAATTCGAGTCCACCCATGGTTTAAGAATCACCTTCC
TTGCTACCTGGCAGTACCTCCCCCATATAAGGAGCAGCAAGCCAAAATGATTGATGAAGA
TATCCTCCGAGAGGTTGTCAACCTAGGATATGATAAAGATCATGTGTGTGAATCGCTGTG
GAATAGGCTGCAAAATGAGGAAACTGTTGCATATTACTTGCTCTTGGACAATCGGTTCCG
ATCTACTAGTGGCTATTTGGGGGCTGACCACCAACATCTCATGGATAGGAGTTTTAATGA
GTTTACCTTATCGGAATCGGCAAGCCCAAGTACCAGGAATTATCTTCCAGGAATCAATGA
TTCTCAAGGTGGTGGCTTACGGCCATATTACCCTGTACAAAGGAAATGGGCTATTGGGTT
GCAGTCCGGAGCTCACCCTCGTGATATAATGATTGAGGTTCTAAAGGCACTTAAGGAATT
AAATGTCTGCTGGAAGAAGAATGGACTCTACAACATGAAATGCAGGTGGTGCCCTGGGTT
TCCTCAGGTCAGCGATATGTTGTTAGATTCCAACCACAACTTTGTTGATGACTCTACCAT
CATGGATAATGGCAATGCTGATGGGAGGCTACCCGCCGTAGTCAAGTTTGAAATCCAGCT
TTACAAGACCAAGGATAACAAGTACCTGCTAGATATCCAGAGAGTTACTGGACCTCAGCT
CCTTTTCCTGGAATTTTGTGGGGCGTTCCTTACCAACCTTAGGGTTCTATAATGCTTGTT
ATGGTTGAGTGGAGAATATCAGAACTTACGACTGTCCCATATGTGTGGTGCGGTTCATCT
TACCAACCTTAGGGTTCTATAATGCTTGTTATGGTTGAGTGGAGAATATCAGAACTTATG
ACTGTCCCGTATGTGTGGTGCGGTTCATCGCCGCAATAGTGAATAAGTGATGTTGTGTAA
ATATATAGGCGGCGGCGTGTTTCATCTTCCTTCTACCCAGTCCCTGACAGCGAACCATGT
TGTTTGAGTGACTAGTCCTGTGTCAAGCACCAAAAGGTTAAGTGGTCGTTAACTTATATG
GTAAATATGTTGTGGTACGGTGAACCTTTTCTGATTCTGCAGGCTGCACGGCTGCTGGTG
GTGATGCTGAAACACAAGCTTTTGTGATATTATTGCAAAA

Homology of Contig U35_17111 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g37800.1	510	protein\|CAMK_KIN1/SNF1/Nim1_like_AMPKh.4 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g65630.1	510
Arabidopsis v10	AT3G01090.2	535	\| Symbols: AKIN10, KIN10 \| SNF1 kinase homolog 10 \| chr3:31437-34143 REVERSE LENGTH=535