barSeed - Barley Seed Development Database

Probe CUST_41428_PI390587928

Source Contig U35_17113

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41428_PI390587928	Hv_44K_v2	GTTACTTATGCTTCTATACAGTTGTTGAAGCCAGACCTTATCATCAACGCTGGTACTGCA	398	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15895.1	1333	2e-24	707 - 766	100	60 / 60	minus	ABC07611
MLOC	AK372119	1196	6e-24	394 - 452	100	59 / 59	plus	ABC07611
JLOC1	JLOC1_10932.1	1364	8e-25	133 - 192	100	60 / 60	plus
Harvest21	ABC07611	1317	3e-25	399 - 458	100	60 / 60	plus	ABC07611
Harvest21	ABC07612	602	1e-24	387 - 445	100	59 / 59	plus
Harvest35	U35_17113	458	3e-25	399 - 458	100	60 / 60	plus
Harvest35	U35_17115	1363	1e-24	388 - 446	100	59 / 59	plus
Harvest35	U35_17114	535	1e-24	387 - 445	100	59 / 59	plus

Contig Sequence (458 bp)

>U35_17113 458 Hv_44K_v2
CAACACGGACGGAAGTGTATAAGGAAGCGAACCGCGGGTTTGGCACCTCCTCGCCCACCG
CCGCCGCCGTCGCCGACCAGATCCCGCGCCGCCGCAGCCCCGCTCCTCCGGCCATGGCGC
CACCCTCCTCCGAAGAGCCGGCCGCCGCCTCCGCCGAGGCCTCCGCGGCCGGCGCCATCT
CCAAGGTCCTCGTCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCACCCGGTTCC
AGCTCGTCGAGGCGGCCGCCGACGAGTCCATATTTCCTAAAGGTGCCCCATGGACTCGGT
ACCATGGCGAATACAAAGGCCTCCACATTGACCTTGTATGGCCTGGAAAAGATCCTCTGC
TCGGAGTGGACAGTGTGGGTACAGTATCGGCAGCTCTGGTTACTTATGCTTCTATACAGT
TGTTGAAGCCAGACCTTATCATCAACGCTGGTACTGCA

Homology of Contig U35_17113 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g51720.1	265	5e-56
Arabidopsis v10	None