barSeed - Barley Seed Development Database

Probe CUST_41426_PI390587928

Source Contig U35_17114

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41426_PI390587928	Hv_44K_v2	ATTGGGGATGTCTTCTTGGCTTCAGATGTTGCATTCCATGACAGGAGAATACCCATTCCT	473	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.957	1.006	1.614	1.760	0.781	0.783
Raw	733.376	1131.807	1693.387	2936.904	455.512	499.292

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372119	1196	2e-24	481 - 540	100	60 / 60	plus	ABC07611
MLOC	MLOC_15895.2	594	2e-24	518 - 577	100	60 / 60	minus	ABC07611
MLOC	MLOC_15895.1	1333	2e-24	620 - 679	100	60 / 60	minus	ABC07611
JLOC1	JLOC1_10932.1	1364	8e-25	220 - 279	100	60 / 60	plus
Harvest21	ABC07612	602	3e-25	474 - 533	100	60 / 60	plus
Harvest21	ABC07611	1317	3e-25	486 - 545	100	60 / 60	plus	ABC07611
Harvest35	U35_17115	1363	3e-25	475 - 534	100	60 / 60	plus
Harvest35	U35_17114	535	3e-25	474 - 533	100	60 / 60	plus

Contig Sequence (535 bp)

>U35_17114 535 Hv_44K_v2
CGAACCGCGGCTTTGGCACCTCCTCGCCCACCGCCGCCGCCGCCGCCGTCGCCGACCAGA
TCCCGCGCCGCCGAAGCCGCCTCCGCCCCGCCCCTCCGGCCATGGCGCCGCCGTCCTCCG
AAGAGCCGGCCGCCGCCTCCGCCGAGGCCTCCGCAGCCGGCGCCATCTCCAAGGTCCTCG
TCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCACCCGGTTCCAGCTCGTCGAGG
CGGCCGCCGACGAGTCCATATTTCCTAAAGGTGCCCCATGGACTCGGTACCATGGCGAAT
ACAAAGGCCTCCACATTGACCTTGTATGGCCTGGAAAAGATCCTCTGCTCGGAGTGGACA
GTGTGGGTACAGTATCGGCAGCTCTGGTTACTTATGCTTCTATACAGTTGTTGAAGCCAG
ACCTTATCATCAACGCTGGTACTGCTGGCGGTTTCAAAGCCAGAGGAGCAGGTATTGGGG
ATGTCTTCTTGGCTTCAGATGTTGCATTCCATGACAGGAGAATACCCATTCCTGT

Homology of Contig U35_17114 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g02220.1	260	1e-70	protein\|MTA/SAH nucleosidase, putative, expressed
Brachypodium v1_2	Bradi1g51720.1	265	1e-77
Arabidopsis v10	None