barSeed - Barley Seed Development Database

Probe CUST_41425_PI390587928

Source Contig U35_17115

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41425_PI390587928	Hv_44K_v2	CTGTGCAATATGTATGCCAAATCTGTTAACTGCAATAATTCTACAGTACTGTCCCAAAAA	1292	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.553	1.618	1.015	0.827	0.396	0.436
Raw	651.650	1044.771	582.913	753.159	126.793	150.754

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_10932.1	1364	2e-21	1038 - 1091	100	54 / 54	plus
Harvest35	U35_17115	1363	3e-25	1293 - 1352	100	60 / 60	plus

Contig Sequence (1363 bp)

>U35_17115 1363 Hv_44K_v2
GAAGCGAACCGCGGGTTTGGCACCTCCTCGCCCGCCGCCGCCGCCGTCGCCGTCGCCGTC
GCCGACCAGATCCCGCGCCGCCGCAGCCCCGCTCCTCCGGCCATGGCGCCACCCTCCTCC
GAAGAGCCGGCCGCCGCCTCCGCCGAGGCCTCCGCAGCCGGCGCCATCTCCAAGGTCCTC
GTCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCACCCGGTTCCAGCTCGTCGAG
GCGGCCGCCGACGAGTCCATATTTCCTAAAGGTGCCCCATGGACTCGGTACCATGGCGAA
TACAAAGGCCTCCACATTGACCTTGTATGGCCTGGAAAAGATCCTCTGCTCGGAGTGGAC
AGTGTGGGTACAGTATCGGCAGCTCTGGTTACTTATGCTTCTATACAGTTGTTGAAGCCA
GACCTTATCATCAACGCTGGTACTGCTGGCGGTTTCAAGGCCAAAGGAGCAGGTATTGGG
GATGTCTTCTTGGCTTCAGATGTTGCATTCCATGACAGGAGAATACCCATTCCTGTTTTT
GACAGTTATGGAATTGGAGCGCGAAAAACATTTGAAACCCCAAATATAGTGAAAGAACTC
AATTTGAAGGTTGGGAAGCTGTCAACTGGTGATTCTCTAGATATGTCTCCTCATGATGAG
TCAGCAATACTGAGCAATGAAGCTACAGTCAAGGATATGGAGGGAGCAGCGGTGGCTTAT
GTTGCTGACTTGTTCTCAACACCCGCTATCTTTGTCAAAGCTGTGACCGACATTGTTGAT
GGGGAGAAGCCAACAGCCGAGGAGTTTCTGCAAAACCTGATCTCGGTGACGATGGCGCTT
GACCAGGCAGTCTTGCAGGTGGTAGACTTCATCAGTGGCAAATGTATCTCTGATCTCTGA
ACGCCCAACCTTCCGCTATGCTGTTCTGGGTTCCACAAATCGAGGGAGCCTGAATATATA
TTGTTGGATGTATAATGTTTCCCTGGGGATTCCACCCAGGTTTTACATTCCCGTGACCCC
CTTGTAAAAAATTCTTGGCGATTACTCCGAGCCATTCTATGGGATTTTGTACAATTTTAC
AAACTATGCAGCTTAGTGAGGCTCGGCTCAATAAGGTGGTGTATTGTTGTACTGGAATAA
ATGATGGGCACTGGAACTCCCATGGATTCAGCACAATGGTTGATGGATGCACCTTGGCAG
CTCTATCACATGGTAGCTAGCTTTGCATGTGCAGTGAGCAATGAATACTTTCCAAATCAG
TGACTAGTAAAGGCATTCATTTCTGGGAGCAGCTGTGCAATATGTATGCCAAATCTGTTA
ACTGCAATAATTCTACAGTACTGTCCCAAAAAAAAAAAAAAAA

Homology of Contig U35_17115 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g02220.1	260	4e-137	protein\|MTA/SAH nucleosidase, putative, expressed
Brachypodium v1_2	Bradi1g51720.1	265	3e-144
Arabidopsis v10	AT4G34840.1	254	1e-97	\| Symbols: ATMTN2, ATMTAN2, MTN2, MTAN2 \| Phosphorylase superfamily protein \| chr4:16606299-16607748 FORWARD LENGTH=254