barSeed - Barley Seed Development Database

Probe CUST_41419_PI390587928

Source Contig U35_17119

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41419_PI390587928	Hv_44K_v2	TTTATTTTAAACCTGTGATATTCCGAGGCTTGTTTTGGCCCTTCCCCAAAAAACAAAAAA	2993	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.189	1.516	1.274	0.974	0.417	0.431
Raw	625.077	1243.297	905.759	1090.310	162.443	183.325

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC40410	113	1e-23	1 - 60	98	59 / 60	minus	ABC40410
Harvest35	U35_17119	3053	3e-25	2994 - 3053	100	60 / 60	plus

Contig Sequence (3053 bp)

>U35_17119 3053 Hv_44K_v2
TAAAAGTGTTCTCGAGAAGCCCGTTAGTTTGATTCAAGGTCCACCTGGCACTGGGAAAAC
TGTTACATCAGCTGCAATTGTGTACCACATGGCAAAACAAGGCCAAGGACAGGTCCTTGT
ATGTGCACCAAGTAATGTTGCTGTTGATCAGTTGGCAGAGAAGATAAGCTCAACAGGTCT
CAAGGTTGTTAGACTTTGTGCGAAATCTAGAGAAGCAGTTTCTTCACCTGTTGAGCATCT
TACGCTCCATTATCAGGTTCGGCATCTCGATACTTCTGAGAAGAGCGAAATGCATAAGCT
ACAACAACTAAAAGACGAGCAAGGAGAATTGTCGAGCAGTGATGAGAAAAAGTACAAGGC
ACTAAAACGAGCGACTGAAAGAGAGATATTACAAAGTGCTGATGTGATTTGTTGCACCTG
TGTTGGCGCTGGAGACCCTCGTTTGTCAAACTTCCGCTTTCGCCAGGTTCTTATCGATGA
GTCTACACAGGCGACAGAGCCAGAATGTCTTATTCCATTGGTTCTTGGTGTTAAGCAGGT
TGTTCTTGTTGGAGATCATTGCCAATTGGGTCCAGTTATCATGTGCAAAAAGGCAGCACG
AGCAGGATTAGCACAGTCTCTCTTTGAGCGTCTTGTTATCCTTGGAGTCAAGCCATTCAG
GCTACAGGTCCAATATAGAATGCACCCTTGTCTTTCAGAATTTCCATCCAACTGTTTTTA
TGAAGGCACACTGCAAAATGGGGTAACTGTAAATGAGAGACAGTCATCGGGAATTGACTT
TCCTTGGCCTGTTCCAAATCGACCCATGTTCTTCTATGTGCAGATGGGAGTAGAAGAGAT
CAGTGCTAGTGGGACATCTTACCTCAATAGGACTGAAGCTGCAAATGTAGAGAAAATTGT
AACTACATTCTTAAGAAGTGGTGTTGTGCCAAGCCAGATTGGAGTTATCACACCTTATGA
AGGGCAGAGGGCGTATATAGTAAATTATATGTCAAGGAATGGCTCTCTTCGCCAACAGCT
TTACAAGGAAATTGAGGTGGCAAGTGTTGACTCCTTCCAGGGAAGAGAGAAAGACTACAT
TATTCTGTCTTGTGTTAGAAGCAATGAACACCAGGGTATTGGCTTTCTTAATGATCCACG
CAGGTTAAATGTTGCATTAACTCGTGCTAGGTATGGTATAGTCGTTCTTGGTAATCCTAA
AGTTCTAAGCAAGCAGCCTCTTTGGAATAGTTTATTGACACATTACAAGGAGCATGAGTG
CTTGGTAGAAGGACCTTTAAACAATTTGAAGCAGAGTATGGTGCAATTTCAAAAACCAAA
AAAGATCTACAATGATCGAAGACTGTTCCTGGGTGGTGGTCAAGGTGTTATGCAGGGATC
TGCCTTTGGCTCTGTAGGCTCAGTAGATAAGAGAAGTGGTAGGGGAAAAGGACACCCCTT
TGTTCCATTTGGGCCACCAAATGGGGCTCACAAACCTGGTGTGCACCCATCAGGCTATCC
TTTACCTCGCATGCCTTATCCTCCATTTCCTGGGTCTCCACATTCACAACCCTACGCAAT
TCCAACTCGGGGATCCCTGCATGGACCCATTGGAGCTGTTCCGGCGGTGCCTCAACCTGG
GAGTAGGAGCTTTGGGGCTCCTCGTGCAAATACCGGTGGCCCTATTGGCGGCCACCTTGC
TGCCCATCAACAGAATTCTCAGCAACCTATGGGGAATGTGGGGCCAACTTATAACTTTGC
TGGTGATCCGAGCAGTCAGCCTTCTGGCGGAGGCCTGATGTCCCAATCTGGACTGATGAC
ACAGATGCCTGTCCAAGGTCTTAGTCAAACATTCCGTGATGGGTTTACCGTTGGTGGGAT
GTCTCAGGACTTATTTGGAGATGATTTCAAGAGCCAAGGATCCCACGTGGCATACAACAT
TGCAGATTTTTCGACTCAGGCTTCTCAAGGAGGCTATGCTGTTGAATATACACAAGGGCC
TCAATCTGGATATCCTGGGAATTATTTGAACCAAAGTGCACATCCAGGGTACCCCCATAT
CGGTGCAACAAATGACATTGTATCTCAGGATCACATGGCCCATGGTTCACATTCCATGTT
TACACAAGCTGGATACAACGACCCATCACAAGATGAATCTTCTCAGATGCATTATGGAAT
GGCTGCTCCTGGCCATCTTCAGTCACAGAGCATGATGAATCCTATGTACTCTCAGTCGTA
CGCTCACTATAACACTCAACCCCAGTCTCTTCAGCCTCCTCCGCAGTGATCAGGAAAGCT
TGTCACACAAGGCTGAAGCCTAATTAAATTTTGGAAGTTTGATGAATTGCATGCATCCCC
TTGGCCCGGGGCATCTTGGTAACGTCATGCTACAGTACTACACAGAAGTGTTGGTGCTAG
ACATCGGTTGCAAGCAAAGAGGACTATTTTGACACATGGGAACGTTTATTGGGTTGGGCT
TGTAAAAGATGGCTATTGCTGGACACCGTTGCTGAGGAACACAGAGACTGCGATGCATCT
CCTTACTTATTGTGGTAATTTTGCAATGGGGCTTGACAACAACAGATGGCCACTTGTGCA
TTAAGAGAAAGGGTGTCGATGCTACACCCACATCCCTTCACCTGTATAGAAGGCAAAAAG
GGCTTGTAGTGGTACAATGTGAATATGTGCTGCCATCTGAGCAAGGGTGGGCAGCCATTG
CCTGCCAACATGGTATCATGAAGATGCCTGCTGATTGGCCTTGTATAGAGGTGCTATAGG
TGGGGTGGCTAACCCTCTCGGATCTCGCTCATGGCCAAGATGCTTGTCTTCACAACTATG
TATGCTTTCTATATAGTTTTGTTATAATTATTACAGAAATGATGTAGGTAATGTTGCTCG
GAACGAGTGCAATAGATTGTGGTGCTTGGTGGAAAGTGAGGTTTTATTCGGTTGTTAAAT
CATTTGGTGTAGCTCTGGCTTGGTTCAGCTATTTAATGCTGATGGGTGTGCGGTTTATTT
TAAACCTGTGATATTCCGAGGCTTGTTTTGGCCCTTCCCCAAAAAACAAAAAA

Homology of Contig U35_17119 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g31340.1	1014	protein\|regulator of nonsense transcripts 1, putative, expressed
Brachypodium v1_2	Bradi1g27027.1	1268
Arabidopsis v10	AT5G47010.1	1254	\| Symbols: UPF1, LBA1, ATUPF1 \| RNA helicase, putative \| chr5:19072009-19078856 FORWARD LENGTH=1254