- Probe CUST_41418_PI390587928
- Source Contig U35_31410
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41418_PI390587928 | Hv_44K_v2 | CTGCCAGAGAAAACATATTGTAACGTTGGTATTCATCTTGTAATGTTGCTATCTCAAACA | 314 | GeneList: purple MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.393 | 0.585 | 1.305 | 2.089 | 0.931 | 1.629 |
| Raw | 3.568 | 10.241 | 22.666 | 61.365 | 8.899 | 17.709 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_78287.2 | 1122 | 2e-24 | 814 - 873 | 100 | 60 / 60 | plus | ABC25388 ABC31592 |
| MLOC | MLOC_78287.1 | 1450 | 2e-24 | 1142 - 1201 | 100 | 60 / 60 | plus | ABC25388 ABC31592 |
| MLOC | MLOC_78287.3 | 1665 | 2e-24 | 1357 - 1416 | 100 | 60 / 60 | plus | ABC25388 ABC31592 |
| MLOC | MLOC_78287.4 | 907 | 2e-24 | 599 - 658 | 100 | 60 / 60 | plus | ABC25388 ABC31592 |
| MLOC | AK376697 | 3685 | 7e-23 | 3610 - 3669 | 98 | 59 / 60 | plus | ABC00091 ABC00416 ABC31592 |
| JLOC1 | JLOC1_52178.6 | 1196 | 8e-25 | 888 - 947 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_52178.5 | 981 | 8e-25 | 673 - 732 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_52178.4 | 1074 | 8e-25 | 766 - 825 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_52178.3 | 1523 | 8e-25 | 1215 - 1274 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_52178.2 | 1106 | 8e-25 | 798 - 857 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_52178.1 | 894 | 8e-25 | 586 - 645 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC31592 | 409 | 3e-25 | 315 - 374 | 100 | 60 / 60 | plus | ABC31592 |
| Harvest35 | U35_31410 | 409 | 3e-25 | 315 - 374 | 100 | 60 / 60 | plus |
Contig Sequence (409 bp)
>U35_31410 409 Hv_44K_v2 TCCGGTTCGTGCTGCTGGTGAACAAGCAGGGGCATACGCGGCTGGCGCAGTGCTACGAGC ACCTCTCCCTCGACGAGCGCCGCGCCCTTGAGGGCGAGATCATCCGCAAGTGCCTCGCCC GCACTGACCAGCAGTGCTCTTTCGTGGAGCACCGTAACTACAAGGTCGTCTATAGGCGCT ACGCCTCCCTCTTCTTCCTCGTCGGCGTGGACAACGATGAGGCGTCCGACAGGTTCTGCA CCTGCATGCTCTTCTCCATATTCCATGAGGTATTGCATCAGGTACTCGTCCACCGGGTCG GTTAAGTAGATAACCTGCCAGAGAAAACATATTGTAACGTTGGTATTCATCTTGTAATGT TGCTATCTCAAACAAACAAACAAAGTTGCAAGAAAAAAAAAAAAAAAAA
Homology of Contig U35_31410 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |