- Probe CUST_41417_PI390587928
- Source Contig U35_31411
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41417_PI390587928 | Hv_44K_v2 | TAGTAGGTTGTTACAACTGTGATGTGGGGTGCCAACAATTGGCAGGAGATTTTGTACCTC | 374 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.861 | 1.599 | 1.134 | 0.803 | 0.323 | 0.337 |
| Raw | 14626.633 | 19858.543 | 12368.177 | 13718.557 | 1972.573 | 2210.577 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_56743.1 | 2121 | 7e-23 | 111 - 167 | 100 | 57 / 57 | minus | ABC07701 |
| JLOC1 | JLOC1_36722.1 | 2396 | 4e-23 | 1969 - 2025 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC43324 | 338 | 4e-24 | 137 - 194 | 100 | 58 / 58 | minus | |
| Harvest21 | ABC07701 | 2307 | 1e-23 | 1944 - 2000 | 100 | 57 / 57 | plus | ABC07701 |
| Harvest35 | U35_31411 | 438 | 3e-25 | 375 - 434 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14086 | 1338 | 1e-23 | 961 - 1017 | 100 | 57 / 57 | plus |
Contig Sequence (438 bp)
>U35_31411 438 Hv_44K_v2 TCGAGCGGCCGCCCGGGCAGGTCGAGCTGCTCATCAAGCCCATGCTGGGCGCCCCCACCG ACGCCGCCGAGGTGAACAAGAACGCCGCCGACCTCGACAAGCTGCTCGACGTCTACGAGG CCCACCTCGCCGCCGGGAACAAGTTCAGCGTGCTGAATGACATGGACGCGGACTATGACT TCAAGGTGGATTACCAGATGAAGGATGCCTCCCCTGCGGACGATGAAGATGGCGATGGCG ATGTCAGCAAAGGCGAAGGTGAAGGCGAAGAACCCAAGGGTGAAGACGACAAGAAAGATG CCCCTGCTGCGGAGTGCGAGCCCATGACGAGTTGATGATGCGTGAGGTAAAAACTGCAGG TTGGGAGTGCGAATTAGTAGGTTGTTACAACTGTGATGTGGGGTGCCAACAATTGGCAGG AGATTTTGTACCTCGGCC
Homology of Contig U35_31411 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |