barSeed - Barley Seed Development Database

Probe CUST_41409_PI390587928

Source Contig U35_31416

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41409_PI390587928	Hv_44K_v2	ATTTCATCGATTATGAGCTTGTCCCCGGGTTGCTTCACCGTGTACCGGGGACGGGCATGT	373	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66722.2	1068	2e-24	510 - 569	100	60 / 60	minus	ABC02490 ABC02491
MLOC	MLOC_66722.1	2988	2e-24	1340 - 1399	100	60 / 60	minus	ABC02490 ABC02491 ABC02492 ABC02499
JLOC1	JLOC1_44006.1	2956	8e-25	1579 - 1638	100	60 / 60	plus
Harvest21	ABC02491	1549	3e-25	202 - 261	100	60 / 60	plus	ABC02491
Harvest35	U35_31416	453	3e-25	374 - 433	100	60 / 60	plus
Harvest35	U35_501	1553	3e-25	202 - 261	100	60 / 60	plus

Contig Sequence (453 bp)

>U35_31416 453 Hv_44K_v2
TCAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCAACCGCGAAAGCGGGGG
TCGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAACATTGGTGAGAATCCAAT
GCCCCGAAAACCCAAGGTTTCCTCCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTA
AGATCAGGCCGAAAGGCGTACTGGACCAAGTATGACAACAACCCGGTGATGTACCCGCCG
CCGGGCGTCGGGGAGAAGGACTTCAGGGACCCGACCACTGCATGGTTTGATGGCTCCGAC
GACACATGGCGGCTTGTTATCGGCTCCAAGGATGATCGCCATGCCGGCATGGTGATGACT
TACAAGACCAAGGATTTCATCGATTATGAGCTTGTCCCCGGGTTGCTTCACCGTGTACCG
GGGACGGGCATGTGGGAGTGCATCGATTTATAC

Homology of Contig U35_31416 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None