barSeed - Barley Seed Development Database

Probe CUST_413_PI390587928

Source Contig U35_9303

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_413_PI390587928	Hv_44K_v2	TCTTGATAAAATGGTTGCATTACAGAGGTTGCTTGAGCCCTACGGCATCTGTGAGATTGC	618	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360295	1915	2e-24	1460 - 1519	100	60 / 60	plus	ABC06684 ABC38926
MLOC	MLOC_36303.5	1865	2e-24	1339 - 1398	100	60 / 60	plus	ABC06684 ABC38926
MLOC	MLOC_36303.1	1637	2e-24	1196 - 1255	100	60 / 60	plus	ABC06684 ABC38926
MLOC	MLOC_36303.3	1632	2e-24	1305 - 1364	100	60 / 60	plus	ABC06684 ABC38926
MLOC	MLOC_36303.6	1682	2e-24	1280 - 1339	100	60 / 60	plus	ABC06684 ABC38926
MLOC	MLOC_36303.2	1766	2e-24	1229 - 1288	100	60 / 60	plus	ABC06684 ABC38926
MLOC	MLOC_36303.4	1627	2e-24	1115 - 1174	100	60 / 60	plus	ABC06684 ABC38926
JLOC1	JLOC1_23357.4	1732	8e-25	1126 - 1185	100	60 / 60	plus
JLOC1	JLOC1_23357.3	1700	8e-25	1094 - 1153	100	60 / 60	plus
JLOC1	JLOC1_23357.2	1736	8e-25	1130 - 1189	100	60 / 60	plus
JLOC1	JLOC1_23357.1	1700	8e-25	1094 - 1153	100	60 / 60	plus
Harvest21	ABC19641	747	3e-25	619 - 678	100	60 / 60	plus
Harvest35	U35_9303	747	3e-25	619 - 678	100	60 / 60	plus

Contig Sequence (747 bp)

>U35_9303 747 Hv_44K_v2
TGAGAAAATGGGACAAACCGCTCCTTTTTGGAGGTTCTCGGTAGCTTCCTATCCTGATCT
TGAAGTGAAAATGCCTTCAAAGTCTACACTAAGCACTGCAAAGGCAACCAGTGGAGATTC
TGAGGAATCATCCCAGGGCGATGTTTATCCAGTGGAATCTTACGAAAGCTTCTCGATGAA
TCAAATTCTTGATGCTCATTGGGGGGCCATGACTGACAGTGATCCTACAGGGTTTTGTTC
ACATACTTTGTCGATCCTTGTGAATGATTCCCCTGGAGTTCTTAATGTCGTAACGGGTGT
CTTTGCCCGGAGAGGCTACAATATTCAGAGTCTTGCTGTTGGCCCAGCTGAAAAAATGGG
CACTTCTCGCATCACCACCGTTGTTCCTGGAAATGATGAATCTATCGCCAAGCTAGTACA
ACAACTTTATAAGCTCATTGATGTTTATGAGGTTCAAGATCTTACACATTTACCATTTGC
GGCTAGAGAGTTAATGATCATAAAGGTCGCTGGGAATACCTCAGCTCGAAGGGATATCCT
GGATATTGCTGAGGATGTTTTCAGGGCCAAAACAGTTGATGTATCAGGCCACACAATAAC
TCTTCAGCTTACCGGGGATCTTGATAAAATGGTTGCATTACAGAGGTTGCTTGAGCCCTA
CGGCATCTGTGAGATTGCACGAACTGGCAGGGTTGCGCTGTGCCGTGAGTCAGGAGTCGA
TTCCAAGTACCTCCGTGGCTATTCCCT

Homology of Contig U35_9303 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g14950.1	477	1e-137	protein\|ACT domain containing protein, expressed
Brachypodium v1_2	Bradi4g20840.1	475	2e-138
Arabidopsis v10	AT2G31810.1	491	2e-117	ACT domain-containing small subunit of acetolactate synthase protein \| chr2:13524271-13528246 FORWARD LENGTH=491