barSeed - Barley Seed Development Database

Probe CUST_4139_PI390587928

Source Contig U35_16761

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4139_PI390587928	Hv_44K_v2	AAGGAACAGGACGGGCTGGCTCATTTTTAGGAATGTATTATTCTGCACTTGGTGAAAAAA	1284	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.843	1.641	2.200	1.433	0.589	0.440
Raw	5137.463	15504.073	17924.667	17838.817	2688.803	2170.213

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364784	1360	3e-21	1307 - 1360	100	54 / 54	plus	ABC06728
JLOC1	JLOC1_28545.2	884	5e-22	726 - 780	100	55 / 55	plus
JLOC1	JLOC1_28545.1	897	5e-22	739 - 793	100	55 / 55	plus
Harvest21	ABC06728	1305	3e-25	1235 - 1294	100	60 / 60	plus	ABC06728
Harvest35	U35_16761	1357	3e-25	1285 - 1344	100	60 / 60	plus

Contig Sequence (1357 bp)

>U35_16761 1357 Hv_44K_v2
ACACGTGACCCACACTCTGCTTCCGCTTCTTCTGCTGCCGTTGCTCCTCAGCTCGCTAAA
AGCCGGCCCAATCCCCTCCTCCCTCTCTCCCACGCCCACCACCAGACAGCACCAGCAGCA
GCAGCACCAGCAGCAGCAGCAGCAGCAGAGAGAGAGAGAAGATGCTGGGGGTGGTGAACT
TCATAACGTTCCTGGCGTCGATCCCGGTGCTGGGGGGCGGAATCTGGCTGGCGTCGCGGG
CGAACACCACGGACTGCATCCGGTTCCTGCAGTGGCCAATCATCATCATCGGGCTCGCCG
TCATGGTCGTCTCCCTCATGGGCTTCGCCGGCGCGTGCTACCGCCAGACCTGGCTGCTCC
GCATCTACCTCTTCGCCATGTTCTTCATCGTCGTCGCCCTCCTCTTCTTCATCGTCTTCG
CCTTCGCCGTCACCGACCGCGGGGAGGGCCAGGTGGTCATGAACCGCCGCTTCCTCGAGT
ACCAGCTCTCCGACTACAACGGCTGGCTCCGCGGCCGCGTCGCCGACCCCGACTACTGGG
CCACCATCAGCGCATGCCTCCGCGACGGCCACGCCTGCCGCTCCATGCGCCGCCCCGTCC
GCGACCCCAACACCGGCATGCTCGTCCTCGAGCCCGCCGTCGTCTTCTACGGCCGCGACC
TCTCCCCGATTCAGTCTGGATGCTGCAAGCCACCGACGTCATGTGCGTTCACCTACAACA
ACGAGACGTACTGGAGCGCGAACCCCGGCGTTCCCACCGTGGTGACCGACCCCGACTGCC
TCAAATGGAGCAACGACCAGCAGACGTTGTGCTTCCAGTGCGACTCGTGCAAGGCTGGCG
TCCTGGCCGGCATCAAGAAGAGCTGGCGCAAGGTGGCCATCATCAACATCGTCGTGCTCA
TCATCCTCGTCATCGTCTACGTCGCCGGCTGCGCCGCGTTCCGCAACGCCAAGAGGGACG
ACAACGATGAGTCGTACGGCATGGCCAGGATGACCAAGTCCCGGCCGAGCAGGTTCCAGT
TCTAGGCTTGCCCGCAGCGAAAAGCCGGGAAAACCTTTGCCTGTACAAAAGGCCACTCGT
TGTGGGTGGTGGTGTTAAGACTTTTGGCCTGAACTATATTTCTTGCTGAACTGTGTTGAT
GATGATGATGATGATTGATCACCCTGTAGCTGGGTTGTGTGAAAGGGAAGGTGTTCTTGG
ATCGAAATGTTTAGTGTGGTGTTTGGGTTCTGTGGTGTTTAGGGTAGGTCTATTCTGTAT
TTGGTGGTACAAGATGAGGTCTGCAAGGAACAGGACGGGCTGGCTCATTTTTAGGAATGT
ATTATTCTGCACTTGGTGAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16761 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g03140.1	295	3e-153	protein\|tetraspanin family protein, putative, expressed
Brachypodium v1_2	Bradi2g37950.1	295	2e-159
Arabidopsis v10	AT3G45600.1	285	2e-99	\| Symbols: TET3 \| tetraspanin3 \| chr3:16733973-16735854 REVERSE LENGTH=285