barSeed - Barley Seed Development Database

Probe CUST_41398_PI390587928

Source Contig U35_7022

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41398_PI390587928	Hv_44K_v2	CGTACTACTGAACAATGTTAACAGCAAGAGGAATAGAATCCAGAAAGACTGGTGGTAAAA	701	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.732	2.491	1.547	0.796	0.338	0.247
Raw	181.463	413.608	218.978	176.837	26.241	20.471

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359585	1155	7e-23	996 - 1052	100	57 / 57	plus	ABC14584 ABC14585
MLOC	MLOC_43985.3	949	7e-23	363 - 419	100	57 / 57	plus	ABC14584 ABC14585
MLOC	MLOC_43985.2	890	7e-23	810 - 866	100	57 / 57	plus	ABC14584 ABC14585
JLOC1	JLOC1_28467.1	1041	4e-23	817 - 873	100	57 / 57	plus
Harvest21	ABC14584	374	3e-25	302 - 361	100	60 / 60	plus	ABC14584
Harvest21	ABC14585	760	1e-23	702 - 758	100	57 / 57	plus	ABC14585
Harvest35	U35_7022	774	3e-25	702 - 761	100	60 / 60	plus

Contig Sequence (774 bp)

>U35_7022 774 Hv_44K_v2
GGCGCGGACGAGCTGTTCGAGGAATTGCTCCAGAAGCACGGCGAGGTCGTGTACAGCTCC
GGCGGGGCCGGCAGCGCGGCCCTGGCCAGCGAGGCCGACGAGGACGCCGAGTGCCTGTCA
CTGGCCGTTTCTCTGGCTAAAGTTGCAAGCGAGGTCAAGGCCGCCGACATCCGTGTGCTC
TTTGTGAAGCCGATTGTGTACTGGACCGAGTTCTTCATCATCCTCACCGCCTTCTCGAAT
GCGCAGATTGAGGCCATCAGTTCCAAAATGAGAGACATCGGCGAGCAGCAGTTTAGCAGA
GTTGCATCTGGTGATACAAAACCCAATTCATGGACCTTGCTGGACTTTGGTGATGTTGTC
GTCCATATATTTCTCCCCCCGCAGCGGGAGTTCTACAACCTTGAGGAATTCTACGGCAAT
GCCACCCCCATCGAACTCCCTTTCGAGACCCAGCTGCAGTAACTACCGCTTGCATTGCAT
CATCGCAGTCGAGCCAAACGAGGACGTTCACTCAAAGCCCCAACCAACAACATTCCACAA
TGCTCAGATGTGGAGAGCTGCCCGCAGATAGATAGATAGCTTGGTCGCAGCTGGACAGTG
ATGCCTAGTGACTACGCTCCTGAAGTATGTGAAATTGGCGCCATCATGCAGTAAAATTCT
TGTAATCTGTTGTTATACCATGTGTATCATTGTAGCAACTACGTACTACTGAACAATGTT
AACAGCAAGAGGAATAGAATCCAGAAAGACTGGTGGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7022 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g32030.1	226	5e-68	protein\|expressed protein
Brachypodium v1_2	Bradi4g34016.1	230	3e-78
Arabidopsis v10	AT3G12930.1	238	5e-55	Lojap-related protein \| chr3:4128465-4129616 FORWARD LENGTH=238