barSeed - Barley Seed Development Database

Probe CUST_41388_PI390587928

Source Contig U35_7032

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41388_PI390587928	Hv_44K_v2	AGATATGTGGGATTCGGTGAGGAGGAAGCTCCATCAATCTTGTTGTTTATGAGCAAAAAA	701	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.672	3.604	2.378	1.283	0.386	0.398
Raw	1375.538	11723.623	6192.240	5403.003	565.429	636.883

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56660.2	1628	3e-22	1091 - 1146	100	56 / 56	plus	ABC11751
MLOC	MLOC_56660.1	942	3e-22	855 - 910	100	56 / 56	plus	ABC11751
JLOC1	JLOC1_36670.1	1514	1e-22	864 - 919	100	56 / 56	plus
Harvest35	U35_7032	772	3e-25	702 - 761	100	60 / 60	plus
Harvest35	U35_28022	355	5e-23	251 - 306	100	56 / 56	plus

Contig Sequence (772 bp)

>U35_7032 772 Hv_44K_v2
GAGAGAGAGGTGGAAGGAGGAAGAAGAAGGGGAGCGGGATGGGGATCGTGGACGTGGTGT
CGGAGTACTGCTCGCTGCCGCGGACTCGCCGGCACATGAAGAAGCGGAAGCAGTTCCAGA
CGGTGGAGATGAAGGTCCGGATCGACTGCGAGGGCTGCGAGCGCAAGGTCAAGAAGGCCC
TCGACGACATGAAAGGCGTGAGCTCGGTGGAGGTGACGCCGAAGCAGAACAAGGTGACGG
TGACGGGGTACGTGGACGCGGCCAAGGTGATGCGCCGGGTGGCATACAAGACCGGCAAGC
GGGTGGAGCCGTGGCCATACGTGCCGTACGACGTGGTGGCGCACCCCTACGCCCCCGGCG
CCTACGACAAGCGCGCGCCCGCCGGCTACGTCCGCAACGTCATGAGCGACCCCTCCGCCG
CGCCGCTCGCCAGGGCCTCCTCCACCGAGGCCAGGTACACCGCCGCATTCAGTGACGAGA
ACCCCAACGCCTGCTCCGTCATGTAGCCTCCCACTCTCCCTTGTCTCCGGCCGCCCGGCC
ACCGGCGACCTTTTCTAGCTTGCCTGCTCTGCTCTGCTCATCCATGGCGGCGTTGGGTGG
GAGGGGTCTCTAGCTAGACAGTTCGCTGGCGTTCTCCTGTGTTTTAAAAAAAACTAGACT
AGACTAGTAAAAGATATGTATTCTTGCTTCGGTTTGGTGTAAGATATGTGGGATTCGGTG
AGGAGGAAGCTCCATCAATCTTGTTGTTTATGAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7032 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g17100.1	156	4e-103	protein\|heavy metal-associated domain containing protein, expressed
Brachypodium v1_2	Bradi5g04560.1	156	2e-102
Arabidopsis v10	AT5G66110.1	147	1e-66	\| Symbols: HIPP27 \| Heavy metal transport/detoxification superfamily protein \| chr5:26430245-26430778 FORWARD LENGTH=147