barSeed - Barley Seed Development Database

Probe CUST_41387_PI390587928

Source Contig U35_7033

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41387_PI390587928	Hv_44K_v2	GCAGCTTCTAATGCATTACGTCAACAAAGATTTGTTCGAGAAGTTACAATACAGCACAAT	1435	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.903	1.083	1.933	1.869	0.841	0.657
Raw	73.538	141.012	212.959	330.254	53.951	43.734

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59966.3	2940	7e-23	802 - 861	98	59 / 60	minus	ABC20352
MLOC	MLOC_59966.4	2931	7e-23	793 - 852	98	59 / 60	minus	ABC20352
MLOC	MLOC_59966.1	3458	7e-23	826 - 885	98	59 / 60	minus	ABC20352
MLOC	MLOC_59966.2	3467	7e-23	835 - 894	98	59 / 60	minus	ABC20352
JLOC1	JLOC1_39064.4	3034	4e-23	2155 - 2214	98	59 / 60	plus
JLOC1	JLOC1_39064.3	3025	4e-23	2155 - 2214	98	59 / 60	plus
JLOC1	JLOC1_39064.2	1444	4e-23	574 - 633	98	59 / 60	plus
JLOC1	JLOC1_39064.1	1453	4e-23	574 - 633	98	59 / 60	plus
Harvest21	ABC15132	1495	3e-25	1436 - 1495	100	60 / 60	plus
Harvest35	U35_7033	1495	3e-25	1436 - 1495	100	60 / 60	plus

Contig Sequence (1495 bp)

>U35_7033 1495 Hv_44K_v2
GTGACAATGAAATAAGAGCTGAGCGAAGGGTGCATGGTGATTTACAGGCGATGTTGTCAA
ATCAGATAAGGATAGCCATCCTACTGGAACTTCAAACTTAGCCTGGAAAGATAATAAAGA
CACCAGGGGTAAAAGATATATTGAACAGCCAGATGATACTGCAGGTTGGCGTTTCCGTCC
TGGTTTGCAAGGCACTGATGAAACTCCCAAGGTTCCAACTCCTGTGGAAGAACGCAACTC
CAAGGATGCACATGAATCTATTGGTGAGAATAAAATAGAACCTAAAAGTGAAGATAAGTT
CAGAGACAAGGACAGGAGAAAGAAAGATGAAAAATATAGAGATTTTGGTGCAAGAGACAC
TGAAAGAAATGATCGCAGAATTGGTATTCAGCTTGCAGGCGGCAGTGTTGAACGAAGAGA
CATTCAAAGGGATGATCGGGATGCGGAAAAATGGGACAGGGAAAGAAAAGATTCTCAGAA
GGACAAGGAAATCAATGACCGTGAGAAGGATTCTTCCAAGAAGGATTCATTAATAGCAGT
TAACAAGGAGACTGCAATGCTGGAAAAAACAGCTTCCGATGGAGCTGTTAAACCCGCTGA
ACATGAGAGTACAGCTGCTGAAATGAAGACACTTAAAGATGACACATGGAAATCTCATGA
TAACTCCAAGGACAAGAAAAGAGAGAAGGATGTGGATACAGGAGACAGGCATGACCAAAG
GAGTAAATATAATGACAAAGAATCTGATGATACTGGTCCTGAAGGAGATACAGAGAAAGA
TAAGGATACCTTCGGAAGTATCCAGCGCAGGAGGATGGCACGTTCAAAGGGAGGTGGTCA
AGCATCTCAACGAGAACCTCGGTTCCGGTCCAAAATGCGTGATGGTGAAGGGTCTCAAGG
TAAATCTGAGATATCTGCAATTGTATATAAAGCTGGTGAATGCATGCAAGAGCTTCTGAA
ATCCTGGAAAGAGTTTGAAGCAACCCCAGATGCTAGAAATGCTGAGAATCAACAAAATGT
TCCTACTCTTGAAATTCGGATACCTGCTGAGTTTGTTACTTCCACTAATCGGCAAGTAAA
AGGCGCTCAGCTTTGGGGAACAGATGTTTATACAAACGATTCAGACCTTGTGGCTGTGTT
AATGCATACTGGTTACTGCTCCCCTACATCATCACCCCCACCATCTGCCATCCAAGAACT
GCGTGCAACTGTCCGTGTGCTACCACCACAAGACAGTTATACTTCAACACTAAGGAACAA
TGTCCGTTCACGTGCTTGGGGTGCTGGTATTGGTTGTAGCTTCCGCATAGAACGCTGCTG
CATTGTTAAGAAAGGTGGTGGTGCCATTGATCTCGAACCTCGCCTTAGCCATACGTCAGC
CGTGGAGCCTACACTAGCTCCAGTTGCAGTAGAGCGTACAATGACAACATGAGCAGCAGC
TTCTAATGCATTACGTCAACAAAGATTTGTTCGAGAAGTTACAATACAGCACAAT

Homology of Contig U35_7033 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g29450.1	458	4e-131	protein\|expressed protein
Brachypodium v1_2	Bradi1g20510.2	771	0.0
Arabidopsis v10	AT5G08450.1	918	2e-148	CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink). \| chr5:2727970-2732572 REVERSE LENGTH=918