barSeed - Barley Seed Development Database

Probe CUST_41385_PI390587928

Source Contig U35_7035

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41385_PI390587928	Hv_44K_v2	AATTCAGCACAAGCTCAACAGCATATTGGGGAATTTGTCAGCTTCAATTCTCCATTCAAA	422	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.869	1.868	1.216	0.862	0.344	0.353
Raw	1330.460	2164.146	1199.426	1340.976	188.969	208.385

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_8546.1	1175	1e-23	1047 - 1104	100	58 / 58	plus
Harvest21	ABC15790	469	3e-25	396 - 455	100	60 / 60	plus
Harvest35	U35_7035	496	3e-25	423 - 482	100	60 / 60	plus

Contig Sequence (496 bp)

>U35_7035 496 Hv_44K_v2
TTGGAGATCCCATCAGCTCCTGATGTTCTTCTGCTTCCTTCTGATCTTGCTCCATCTGTG
AAGGTGCTTTCCGTGAACGAAGACACGGAGGAACAGAAACGGTTCATCTGTGTGAACCCT
GGGAGGCTAGCAAAAGGTATCGGTGGAGGCACGTTTGTAGAGCTTTACTACAACGAGGAC
ACTGAGAAAACGAAAGCCTTCATTATGCGCATCTAAGAAAGAATTTGTAACATTTTCCTA
TTCACCAAGTACTGGACTGGAAAGATGAGACTAGTATGAAGTACGCCAGTTCTGTTATCG
TCCCACTCTGCTGTGAATTGGATCCAGAGAGTCCGTAAGTCTGTAATTCTAGTTAGTTAA
TTCAGCTTAGTGGTGGAGGAGAACATTGCGAAAACTTATTTGTAACATGTACGTACATTT
TAAATTCAGCACAAGCTCAACAGCATATTGGGGAATTTGTCAGCTTCAATTCTCCATTCA
AAAAAAAAAAAAAAAA

Homology of Contig U35_7035 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None