- Probe CUST_41383_PI390587928
- Source Contig U35_7037
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41383_PI390587928 | Hv_44K_v2 | GTCGCATGGAGGTTCTTAAAGGATATGCCCATGTAATTAACGTTGTTCTACATCAATAAT | 362 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.804 | 2.395 | 1.163 | 0.691 | 0.199 | 0.248 |
| Raw | 61756.867 | 46357.600 | 20592.133 | 18390.733 | 2046.453 | 2714.313 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC16467 | 452 | 3e-25 | 363 - 422 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_7037 | 452 | 3e-25 | 363 - 422 | 100 | 60 / 60 | plus |
Contig Sequence (452 bp)
>U35_7037 452 Hv_44K_v2 GTGCTCTCGGCCGAGCCAATAGGTGCATCCGCCAGTGATATGCGTGGGCTAGCCGTCGCC GCTGCCAACCTAACCATTCACAACGTGACGTCCACGCTGCATATTATGAGCGACATAGTG GCTGAGCTCAACGCTTGTAGCACTTATTATAAGTATATGGTTGATTTGGTAGTGAGCGCC ATTGATGACTTGCACAAAGGACGAGATGCTGAACTGATATACGAAAAGTTATATAAGGCC TCAGATACGCCCGAAAATTGTGATATTGCGTTGTTTGAGGGAGCCCAGAGTAATCCTGTG CAGGCAGAGAACTCAGAAAATAAAGCTTTGGCCCGCATAGCAAGTGGCATCGCATTTGTC ATGTCGCATGGAGGTTCTTAAAGGATATGCCCATGTAATTAACGTTGTTCTACATCAATA ATACTATGAATAAAGAGATATCTCCACCTCTT
Homology of Contig U35_7037 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |