barSeed - Barley Seed Development Database

Probe CUST_41379_PI390587928

Source Contig U35_7041

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41379_PI390587928	Hv_44K_v2	GAAACCTTCGTGTAGTACCTCATTCTTGTTTTCCTCTAGCTCGCTACCTTTGATTTAATT	786	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.613	1.449	1.078	0.820	0.289	0.370
Raw	2376.280	3283.573	2171.547	2673.222	320.539	452.917

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_41054.2	2113	8e-25	1846 - 1905	100	60 / 60	plus
JLOC1	JLOC1_41054.1	2664	8e-25	2397 - 2456	100	60 / 60	plus
Harvest21	ABC24574	881	3e-25	36 - 95	100	60 / 60	minus	ABC24574
Harvest35	U35_7041	885	3e-25	787 - 846	100	60 / 60	plus

Contig Sequence (885 bp)

>U35_7041 885 Hv_44K_v2
TTCATGCGCAATTGCAGTTCGGTTGATAATGATGCTAAAGAAAAGCTTCAGCCTTTTGCA
AACCTGACTAGTGAAGAAAGCTACCAAAGTCGTGACTTGGAAAAGGGCTCTCAACAACTG
GCAAAGCATTTGTATGACATCAAAGTTCAACCGTCAACGTTGCTTCCAAAACAAATTGGT
AACATGTATACTGCATCTCTGTATGCTGCATTGGCATCTGTAATCTACAACAAGCATGCT
AGTCTGAATGGCCAAAGAATTGTCATGTTTTCTTACGGCAGTGGCTTGACATCCACTATG
TTTTCATTCAAACTAAATGAGGGTCAGCATCCCTTTAGTTTAACAAATATTGCTTCTGTG
CTTGATGTGGCGGCAAAGCTTGAGTCAAGACATGTGACTTCACCTGAGAAGTTCATCGAC
ACACTGAAGCTGATGGAGCACCGATATGGAGCAAAAGATTTTGAAACAAGCAAAGACATA
AGCTTGTTGCCACCAGGAACGTTCTACCTTACAAAAGTTGATTCAATGTACAGGAGGTTC
TATGAAAAGAAAACCGATGGCATTGTTGACGGCAAAATCAAGTGCAGCAATGGCATTGCA
AATGGCCACTAGTGGCATATCATCAGATACTATTAGTCCGCATTGCATTTTATTAGCCAT
CATCCTTACACTTTGTTGTATTTATCTCTAGAATTCCCAGTCTAGCTAAGTTTCAAATAA
CCCATTATTCTCTAAAGTTGTTTTCCCCACACTCTTCAGCTTATTTTTTCATTGTTGAGC
TGAACTGAAACCTTCGTGTAGTACCTCATTCTTGTTTTCCTCTAGCTCGCTACCTTTGAT
TTAATTATTTTGTTGCTTGTGACCACTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7041 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g43170.1	468	5e-120	protein\|hydroxymethylglutaryl-CoA synthase, putative, expressed
Brachypodium v1_2	Bradi3g42010.1	468	1e-126
Arabidopsis v10	AT4G11820.2	461	2e-82	\| Symbols: MVA1, FKP1 \| hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase \| chr4:7109124-7111901 REVERSE LENGTH=461