barSeed - Barley Seed Development Database

Probe CUST_41378_PI390587928

Source Contig U35_7042

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41378_PI390587928	Hv_44K_v2	ACCGACTCCTGATGCTGGAACTTTTTGTCGATTTTCATGGGAACTGCTGTCAGTAAAAAA	982	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.473	1.527	1.086	0.828	0.359	0.462
Raw	873.169	1391.472	879.529	1028.844	161.421	223.645

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC15425	1053	3e-25	983 - 1042	100	60 / 60	plus	ABC15425
Harvest35	U35_7042	1053	3e-25	983 - 1042	100	60 / 60	plus

Contig Sequence (1053 bp)

>U35_7042 1053 Hv_44K_v2
GCAAAGATGGTGGGCTGAGAACTATGACAAGGTTATGGAACTTTACAATGTGCAGAGGTT
TAACCATCAAAGTGTTCCTCTCCCCACTACTCCAAAGTCTGAAGATGAGAGCTCAAAGGA
GGACAGCCCGGTAACACCACCACTGGACAAGGAGCGATTACCTCGTTCTTTACAGAGACC
ACCGACCGGTGGCGGAGTGATGGGTTACTCTTCTTCTGATTCTCTTGAGCACCATCCTAA
CCACTACTGTAACGACCTCCACCATCACCATGGACACCAGTGCTATGATTCAGTGGGGCT
GGCATCGACACCAAAGCTGTCAAGTATAAGTGTGGCCAAGACAGAAACATCATCGATGGA
TGCGTCGATGAGGACGAGTTCATCTCCAGAAGAGGTCGACAGGTCTGGCGAGCTCTCAGT
GTCCATCAGCAACGCGAGCGACCAAGAGAGGGAATGGGTTGAGGAAGACCAGCCTGGTGT
ATATATTACCATCCGGGCTTTGCCTGGTGGCATCAGAGAGCTTCGCCGTGTCCGATTCAG
CCGAGAGAAGTTCAGCGAGATGCATGCGAGGCTATGGTGGGAAGAGAACCGGACGAGGAT
ACATGAACAGTACCTCTGAGACAGAAGAACTGAAGAAGCACAGATGAAAACAAAACCTAG
AACTTCGCCGTTGACATGAGCCAGCCGTGGATCCATGTTGTACATTTGCAGTTTGAGTTA
ACATTACTCCCTCTCTGGGCAGCAGCATCGATCAGTGTAAAGCGTGTGTGAGGTGAAGGC
GTCTTCAGAAGGAACTTTCTGAACTAAACTGATCTGCCAGGCTCTCCCTGATTATGTGGC
CATCCACATGTTGTCCTGGCTTTAGATTGCGCAGGAACTTTCTGTTGAGTAGCTCAAGAG
GTTTTATTTTTTAGCTCAAAAGGTTTCTACTGTGTAGCCTAGTAGACATACCATCTGTCC
TGAAGCTGTAGCTTTTGTCAAAACCGACTCCTGATGCTGGAACTTTTTGTCGATTTTCAT
GGGAACTGCTGTCAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7042 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g27230.1	256	1e-114	protein\|brevis radix, putative, expressed
Brachypodium v1_2	Bradi4g31550.1	395	3e-114
Arabidopsis v10	AT5G20540.1	384	1e-68	\| Symbols: ATBRXL4, BRX-LIKE4, BRXL4 \| BREVIS RADIX-like 4 \| chr5:6947943-6951760 FORWARD LENGTH=384