barSeed - Barley Seed Development Database

Probe CUST_41376_PI390587928

Source Contig U35_7044

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41376_PI390587928	Hv_44K_v2	TGACTCTCTACCTCCATTGAGTTTATATATTGTTGTCATGGGTTTCTTGTACCGGTAATA	549	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.994	2.354	2.002	1.018	0.209	0.154
Raw	8579.890	32767.643	23484.400	19196.710	1350.631	1076.639

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67061.1	677	2e-24	567 - 626	100	60 / 60	plus	ABC14770
JLOC1	JLOC1_44237.1	649	8e-25	566 - 625	100	60 / 60	plus
Harvest21	ABC14770	652	3e-25	550 - 609	100	60 / 60	plus	ABC14770
Harvest35	U35_7044	652	3e-25	550 - 609	100	60 / 60	plus

Contig Sequence (652 bp)

>U35_7044 652 Hv_44K_v2
AAAAACCACAAGAACGCAAGATGAGAATTCAATTCTTGCTCCTCACCATCCTCCTTCTAT
CTCTCCAATGCAATACTTCCCCGGTTAGTGGAAGCAGGAAGGTGACGAACATCCGCTTCT
ACCTCCACAACACTCATAGCGTGAATGATCCATCCTCGGTCCTCGTCGCCGAAAACAAGA
ATGCCACAACCCATGCTCGTGGTCTAGTGCCCTTTAGCTCCGTCTACGTGTTTGACGATG
TGCTCACCGAGGGGCCCGCAAGTACATCAAAGGTGATTGGGAATGCACAGGGCATGTATG
TTGAAACGGGGAAAGATGGGTACACGATCTTGGAAACTATTGATTGTGAGATGACAGATG
GTCCGTTCAAAGGTAGCTCGTTTGTGATGTTCTCAAGAAACCAATTCAGTAATCCAAGCA
GAGAGCTCCCCGTTATTGGAGGTCGTGGTGCATTTCAAATGGCCCAAGGGTACGGCTTGC
TCAGGACCGTATGCATAAACTGTATTAACTCCGTGAACCCGTCCAAGGGAGATATCATCG
AGTATAATGTGACTCTCTACCTCCATTGAGTTTATATATTGTTGTCATGGGTTTCTTGTA
CCGGTAATAATAATAATGGATGATTGATGTTTCTAGTTAAAAAAAAAAAAAA

Homology of Contig U35_7044 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g59440.1	187	2e-51	protein\|dirigent, putative, expressed
Brachypodium v1_2	Bradi2g59970.1	190	9e-85
Arabidopsis v10	None