barSeed - Barley Seed Development Database

Probe CUST_41374_PI390587928

Source Contig U35_7046

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41374_PI390587928	Hv_44K_v2	ACAGAATGATATTAACGCTCTTCTGTCCAACTTGCCTTACGACCAAGTAGTCGCGAAGTT	564	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357519	1402	2e-24	685 - 744	100	60 / 60	plus	ABC24735
MLOC	MLOC_61750.4	1472	2e-24	755 - 814	100	60 / 60	minus	ABC24735
MLOC	MLOC_61750.3	1660	2e-24	816 - 875	100	60 / 60	minus	ABC24735
MLOC	MLOC_61750.2	1157	2e-24	820 - 879	100	60 / 60	minus	ABC24735
MLOC	MLOC_61750.1	1561	2e-24	853 - 912	100	60 / 60	minus	ABC24735
JLOC1	JLOC1_40367.2	1629	8e-25	656 - 715	100	60 / 60	plus
JLOC1	JLOC1_40367.1	1292	8e-25	319 - 378	100	60 / 60	plus
Harvest21	ABC17439	705	3e-25	565 - 624	100	60 / 60	plus
Harvest35	U35_7046	705	3e-25	565 - 624	100	60 / 60	plus

Contig Sequence (705 bp)

>U35_7046 705 Hv_44K_v2
GGCAGACAGAGACAGAGGTCCAAGGTCGTCAATGTCGGGAGCAGCAGCAGGCGGCAGCGC
GCCACGCCCAGCCCTTCCCCTCGCTCAGGCAGTGGCGCTGGCGCTGGCGCTCTCGCTCTC
GCCGTCGCCGGCGCTGGCCGGGTTCAGCTGCGGCCCGGGCGCCCGGCCGGTGGTGTTCAA
CTTCGGCGACTCCAACTCCGACACGGGCGGCATGGCGGCGGCCAAGGGGTGGCGCATCGC
GCCGCCGGAGGGCCGCGCCTTCTTCCACCGCCCCACCGGCCGCTTCTGCGACGGCCGCCT
CATCATCGACTTCCTCTGTGAAAGCTTAAACATAAGCTATCTGAGTCCTTATCTGAAGGC
ATTGGGTTCTAACTACAGTAACGGAGTGAATTTCGCCATTAGCGGTTCAACAACACTACC
ACGGGATGTTCTTTTTACATTGCATGGACAGGTGCAGGAATTCTTCTTCTTTAAAGCCAG
ATCCTTGGAACTCATCAATCAAGGTCAGCAAGTTCCAATCGATGCAGAAGCATTCCAAAA
TGCTCTATATACCATAGACATAGGACAGAATGATATTAACGCTCTTCTGTCCAACTTGCC
TTACGACCAAGTAGTCGCGAAGTTCCCTCCAATACTTGCGGAGATTAAGGATGCTGTTCA
GCTTCTGTATGCCAACGGGAGTCAGAACTTCTGGATACATGGAAC

Homology of Contig U35_7046 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g22660.1	385	4e-105	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi2g12340.1	370	4e-120
Arabidopsis v10	AT1G09390.1	370	5e-59	GDSL-like Lipase/Acylhydrolase superfamily protein \| chr1:3031264-3033415 FORWARD LENGTH=370