barSeed - Barley Seed Development Database

Probe CUST_41373_PI390587928

Source Contig U35_7047

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41373_PI390587928	Hv_44K_v2	TGAAAGCTTAAACATAAGCTATCTGAGTCCTTATCTGAAGGCATTGGGTTCTAACTACAG	421	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357519	1402	2e-24	439 - 498	100	60 / 60	plus	ABC24735
MLOC	MLOC_61750.4	1472	2e-24	1001 - 1060	100	60 / 60	minus	ABC24735
MLOC	MLOC_61750.3	1660	2e-24	1062 - 1121	100	60 / 60	minus	ABC24735
MLOC	MLOC_61750.2	1157	2e-24	1066 - 1125	100	60 / 60	minus	ABC24735
MLOC	MLOC_61750.1	1561	2e-24	1099 - 1158	100	60 / 60	minus	ABC24735
JLOC1	JLOC1_40367.2	1629	8e-25	410 - 469	100	60 / 60	plus
JLOC1	JLOC1_40367.1	1292	8e-25	73 - 132	100	60 / 60	plus
Harvest21	ABC17439	705	3e-25	319 - 378	100	60 / 60	plus
Harvest35	U35_7047	507	3e-25	422 - 481	100	60 / 60	plus
Harvest35	U35_7046	705	3e-25	319 - 378	100	60 / 60	plus

Contig Sequence (507 bp)

>U35_7047 507 Hv_44K_v2
TCGAGCACTGTTGGCCCGCCGCGCTTCGCGAGGGAGAGAGAGAAAAGTGAGCGGGACGCG
ACACGCCGCGGCACATGCTGCAGGCAGACAGAGACAGAGGTCCACCAAGGTCGTCAATGT
CGGCAGCAGCAGCAGCAGCGGCAGGCGGCAGCGCGCCACGCCCAGCCCTTCCCCTCGCTC
AGGCAGTGTCCCTGGCGCTGGCGCTGGCGCTGGCGCTCTCGCCGTCACCGGCGCTGGCGG
CCGGGTTCAGCTGCGGCCCGGGCGCCCGGCCTGTGGTGTTCAACTTCGGCGACTCCAACT
CCGACACGGGCGGCATGGCGACGGCCAAGGGGTGGCGCATCGCGCCGCCGGAGGGCCGCG
CCTTCTTCCACCGCCCCACCGGCCGCTTCTGCGACGGCCGCCTCATCATCGACTTCCTCT
GTGAAAGCTTAAACATAAGCTATCTGAGTCCTTATCTGAAGGCATTGGGTTCTAACTACA
GNTACGGAGTGAATTCGCCATTAGCGG

Homology of Contig U35_7047 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None