barSeed - Barley Seed Development Database

Probe CUST_41369_PI390587928

Source Contig U35_7051

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41369_PI390587928	Hv_44K_v2	TCTGGAACTGTTGTTTTCTGCTTCAGAATGGTTTCAAACCGTTAAGAGGTCCCCAAAAAA	1057	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.895	1.604	2.243	1.542	0.561	0.617
Raw	98.133	275.726	337.774	364.994	46.781	54.606

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_7051	1128	3e-25	1058 - 1117	100	60 / 60	plus

Contig Sequence (1128 bp)

>U35_7051 1128 Hv_44K_v2
AGTCAAGCTTCTCACAAATGACTCATATCAGGGCATCCGAGAATTCTTGAATGAGGTGGC
GTTGCTTTCGAGAATACATCATAGGAACTTGGTAACCTTCCTTGGTTACAGTCAGCAAGA
CGGGAAGAACATACTTGTGTATGAGTTCATGCACAATGGAACACTAAAAGAGCACCTTCG
TGGAGGACCTAATGATGTGAAAATAACTAGCTGGGTTAAGCGCCTTGAGATAGCAGAAGA
TGCTGCGAAAGGTATAGAGTACCTCCACACGGGATGCTCCCCAACCATAATTCACAGAGA
CGTTAAGAGTAGTAACATTTTACTTGACAAGAACATGAGGGCAAAAGTGGCAGACTTTGG
CCTATCAAAACCTGCGGTCGATGGGTCTCATGTATCAAGCATAGTTCGTGGAACGGTTGG
GTATCTTGATCCAGAGTACTACATCTCTCAGCAGCTAACCGAGAAGAGCGACATCTACAG
TTTTGGTGTCATTTTACTTGAGCTAATCTCTGGCCACGAGCCAATCTCTAGTGATAACTT
TGGGCTCAACTGCCGTAACATTGTGGCATGGGCTAGGTCACACATCGAGAGTGGGAACAT
CGACGCCATCATTGACGCATCGCTAGATAGCGGCTACGACCTGCAGTCGGTGTGGAAGAT
CGCAGAGGTGGGCATCATGTGTGTCAAGCCAAAGGGTGCGCAGAGGCCAACCATCTCCGA
GGTGCTCAAGGAGATCCAGGACGCCATCGCCATCGAGGTGCAGCGGGAGGCGCCCCAAGT
CCAGCAACTCATGTCCAAGAGGTCCATGGGTTCTGTCTCAATCAACACGGACAACAGCGC
CGATTTGGAGCAGAACGCGTCGTTTGATGAAATGCTCATGCGGCCGGGCCTCAGGTAGAA
CCAGGATTCATTAGAGACGCTTTTCATGTAAGCAAGGAGAAGGAGATGCTCATGTGTTAG
TTAGTCTTTCTGTTTCCTGGTGATGATTTGAAAGCTGTGAATTACACTAGCTCTAGCTTA
TGTCCAAATTGGGGATTTGATGGTGAAAGAATGGTGATCTGGAACTGTTGTTTTCTGCTT
CAGAATGGTTTCAAACCGTTAAGAGGTCCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7051 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g01200.1	925	2e-174	protein\|senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed
Brachypodium v1_2	Bradi4g45227.1	922	0.0
Arabidopsis v10	AT2G37050.3	934	9e-124	Leucine-rich repeat protein kinase family protein \| chr2:15569290-15573477 FORWARD LENGTH=934