barSeed - Barley Seed Development Database

Probe CUST_41368_PI390587928

Source Contig U35_7052

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41368_PI390587928	Hv_44K_v2	CCTCCCAAGTATGACTCCTATGATAATAACAATGGCACGCTTTGCCTGATCCCCAAAAAA	1411	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.286	0.302	0.841	1.522	1.941	1.784
Raw	3.718	6.490	21.310	64.232	25.287	26.984

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC14993	899	3e-25	12 - 71	100	60 / 60	minus	ABC14993
Harvest35	U35_7052	1482	3e-25	1412 - 1471	100	60 / 60	plus

Contig Sequence (1482 bp)

>U35_7052 1482 Hv_44K_v2
CGCCACCATTCTCCCCAACGGCACCGTCATCGTGCTTTACACGGGTAAAACCGACACCTC
TGCTCAAGTTCAGTGCCTCGCCATGCCCACTGACCCGGATGACCCACTCCTTGTCAACTG
GACCAAGCATCCTGCCAACCCCGTCATCCTCCCACCCCCCGGCATCGGCCTCCAGGACTT
CCGCGACCCCACCACCGCATGGTTCGATAATTCCGACCTGACATGGCGCACCATCATCGG
CTCCAAGGACGACAACGGCCATGCCGGCATCGCCTTGATGTACAAGACCAAAGACTTCAT
CAGGTACGAGCTCATCCAGGGGGTGCTCCACCGCGTCGAGGGCACCGGAATGTGGGAGTG
CGTCGACTTCTACCCTGTCGGCGGCGGCAACAGCTCCTCGGAGGAGGAGGCGATGTATGT
GTTGAAGGCGAGCATGGACGATGAACGCCATGACTACTACGCGTTGGGGAGGTATGATGC
GGCGACCAACACGTGGACGCCATTGGACCCGGAGCTGGACGTGGGGATCGGGCTGAGGTA
CGATTGGGGAAAGTTTTTTGCTGCCACCTCTTTCTATGACCCGGTGAAACGACGGCGCGT
GATGTGGGCTTATGTCGGCGAGACCGACTCCTTGAGTGCCGACGTTGCCAAGGGATGGGC
TTCGGTCCAGACAATTCCGAGGACGGTGGTGTTGGATGAGAAGACCCGGACGAACCTCCT
CCAATGGCCGGTGGAGGAGATCGAGACGCTCCGCTTCAACAGCACTGACTTTGGTGTCAT
CACCATCCACACTGGATCCATCATCCCTCTCTGCCTCCGTCAAGCAACTCAGCTTGATAT
CGAGGCGTCCTTTCGCCTAGACGATTCCGCCATTGCCAACATCAACGAGGCCGACGTGAA
CTACAATTGCAGCACGAGTAGCGGAGCCTCAACCATGGGCGCACTTGGTCCCTTCGGCCT
CCTCATCCACGCCGCTGCCAACGGTGGCAGCGAACAACTAGCGGTTTACTTCCATGTGTC
AAGGGGCCTCGATGGGGCACTCCGAACCCACTTCTGCCATGACGAGCTGTTGTCGTCTCG
GGCGAGTGATGTCATGAAGCGGGTGGTTGGCAGCACTGTGCCGGTGCTCGACGGTGAGGC
TCTATGTGTGAGGGTGCTCGTGGACCATTCCATCGTAGAGAGCTTTGCGATGGGCGGTAG
GTTGACAGCGACGTCACGGGTGTACCCGATGGAAGCCATCCACACGGCGGCGGGGGTGTA
CCTTTTCAACAACGCCACTGGATCCTCCATCACCGTCGAGAAGCTTGTAGTTCATGAGAT
GGCCTCGACGTCTTAGAACCAGACATTCGTGGCCGACGATGACTGGTAGCTTTAGTAAGC
TGTATACTCATATGCTAATGCGGGTCACCTGCCTCCCAAGTATGACTCCTATGATAATAA
CAATGGCACGCTTTGCCTGATCCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7052 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g01590.1	663	0.0	protein\|glycosyl hydrolases, putative, expressed
Brachypodium v1_2	Bradi1g52210.1	613	0.0
Arabidopsis v10	AT1G62660.1	648	1e-148	Glycosyl hydrolases family 32 protein \| chr1:23199949-23203515 FORWARD LENGTH=648