barSeed - Barley Seed Development Database

Probe CUST_41365_PI390587928

Source Contig U35_7055

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41365_PI390587928	Hv_44K_v2	ACAGTTTGGAATGCTCATAGAATTTCTATTTGAGAAGTTTCCGAATTGGGAGGAACTTGG	739	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5591.2	2227	2e-24	785 - 844	100	60 / 60	plus	ABC09377
MLOC	MLOC_5591.6	1395	2e-24	489 - 548	100	60 / 60	minus	ABC09377
MLOC	MLOC_5591.5	1689	2e-24	782 - 841	100	60 / 60	minus	ABC09377
MLOC	MLOC_5591.4	1873	2e-24	982 - 1041	100	60 / 60	minus	ABC09377
MLOC	MLOC_5591.1	2309	2e-24	1418 - 1477	100	60 / 60	minus	ABC09377
MLOC	MLOC_5591.3	2255	2e-24	1371 - 1430	100	60 / 60	minus	ABC09377
JLOC1	JLOC1_3607.2	2573	8e-25	851 - 910	100	60 / 60	plus
JLOC1	JLOC1_3607.1	2545	8e-25	823 - 882	100	60 / 60	plus
Harvest21	ABC16408	787	3e-25	725 - 784	100	60 / 60	plus
Harvest35	U35_7055	802	3e-25	740 - 799	100	60 / 60	plus

Contig Sequence (802 bp)

>U35_7055 802 Hv_44K_v2
ACTCGCGGCCGCAGCAGCAACTGCAGTAGTGGCGGCGCCTACCCCCGCACGACTCCTCCT
CGTCTCCGCCCGCCGCGCTGCTCCGCGATTCGCTAGGTCATTGTAGAGCATCTCCCTTCA
CAAGGTTACCGAGGAGTGCCTGCTACGCGTCCACCACCATGGGAGACGAGACCTCCACTT
CTGCCTCAGGCTCGGCCCAGGAACCTGCAGCACCGGCCGTGCAGGGAGCCGGGAGTGTCA
AGCAGCAGATCTCCAACTTGGTGGCTCTGTCACTCCATGCGACAGTGCCTGAAGTGGATG
TAGAACCGATAGTTGAAGTTTGCACGGGAAAATTTGGTGACTACCAGTGCAACAATGCAA
TGGGATTGTGGTCAAAAGTAAAGGGATCCGGGACAAGCTTCAAAAACCCCAATGCAATTG
GACAGTCGATTGCTAAGAACCTGCCTGCCTGTGACGTTATTGAATCAGCCTCTGTTGCTG
GTCCTGGTTTTGTGAATATTGTCTTATCCAAGAGCTGGGTTGCTAAGAGAATACAAGATA
TGCTTGTGAATGGTATCAAAACTTGGGCACCAATTCTTCCAGTTAAGAGGGTAGTGCTTG
ATTTCTCATCTCCTAATATTGCAAAGGAAATGCATGTTGGGCATCTAAGGTCAACAATCA
TTGGAGACACCTTAGCACGCATGTTTGAATTCTCAAATGTTGAAGTTCTTCGACGCAATC
ATGTGGGAGACTGGGGTACACAGTTTGGAATGCTCATAGAATTTCTATTTGAGAAGTTTC
CGAATTGGGAGGAACTTGGCAG

Homology of Contig U35_7055 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g07030.1	665	4e-126	protein\|arginyl-tRNA synthetase, putative, expressed
Brachypodium v1_2	Bradi2g34680.1	662	5e-135
Arabidopsis v10	AT4G26300.1	642	6e-81	\| Symbols: emb1027 \| Arginyl-tRNA synthetase, class Ic \| chr4:13308400-13313109 REVERSE LENGTH=642